Evidence map›Paper›PMID 25316812›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2014

Whole-exome sequencing of muscle-invasive bladder cancer identifies recurrent mutations of UNC5C and prognostic importance of DNA repair gene mutations on survival.

Kai Lee Yap, Kazuma Kiyotani, Kenji Tamura, Tatjana Antic, Miran Jang, Magdeline Montoya, Alexa Campanile, Poh Yin Yew, Cory Ganshert, Tomoaki Fujioka and 3 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04872036 (Investigation of Prognostic Biomarkers in Patients With Urothelial Carcinoma Treated With Platinum Regimens), which is not on this map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04872036 completednot on this map

Investigation of Prognostic Biomarkers in Patients With Urothelial Carcinoma Treated With Platinum Regimens

TypeobservationalSponsorHellenic Cooperative Oncology GroupRan2000 to 2017Enrolled66ConditionsBladder Cancer
3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Alterations in DNA Damage Response and Repair Genes as Potential Marker of Clinical Benefit From PD-1/PD-L1 Blockade in Advanced Urothelial Cancers.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2018
    Trial
  4. Afatinib Activity in Platinum-Refractory Metastatic Urothelial Carcinoma in Patients With ERBB Alterations.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2016
    Trial
  5. Article
  6. Review
  7. Review
  8. Research progress of the netrins and their receptors in cancer.Journal of cellular and molecular medicine · 2024
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Immunogenomics in personalized cancer treatments.Journal of human genetics · 2021
    Review
  15. Mutations ofJournal of clinical and translational research · 2021
    Article
  16. Article
  17. Transcriptome-Wide Map of NFrontiers in oncology · 2021
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Kai Lee YapDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Kazuma KiyotaniDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Kenji TamuraDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Tatjana AnticDepartment of Pathology, The University of Chicago, Chicago, Illinois.
Miran JangDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Magdeline MontoyaDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Alexa CampanileDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Poh Yin YewDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Cory GanshertDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois.
Tomoaki FujiokaDepartment of Urology, Iwate Medical University, Morioka, Japan.
Gary D SteinbergDepartment of Surgery, Section of Urology, The University of Chicago, Chicago, Illinois.
Peter H O'DonnellDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois. ynakamura@bsd.uchicago.edu podonnel@medicine.bsd.uchicago.edu.
Yusuke NakamuraDepartment of Medicine, Section of Hematology-Oncology, The University of Chicago, Chicago, Illinois. Department of Surgery, The University of Chicago, Chicago, Illinois. ynakamura@bsd.uchicago.edu podonnel@medicine.bsd.uchicago.edu.
University of Chicago · USIwate Medical University · JP

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI MARK W. LINGEN · 1985 to 2026
$122.1M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
The 1200 Patients Project: Studying Clinical Implementation of PharmacogenomicsK23GM100288 · NIGMS · UNIVERSITY OF CHICAGO · PI O'DONNELL, PETER HUGH · 2013 to 2016
$751k
NCATS NIH HHS UL1 TR000430NCI NIH HHS N02 CO07009-65NCI NIH HHS P30 CA014599NIGMS NIH HHS K23 GM100288NIGMS NIH HHS K23 GM 100288-01A1
6 · The paper itself

Abstract

purposeBecause of suboptimal outcomes in muscle-invasive bladder cancer even with multimodality therapy, determination of potential genetic drivers offers the possibility of improving therapeutic approaches and discovering novel prognostic indicators. EXPERIMENTAL

designUsing pTN staging, we case-matched 81 patients with resected ≥pT2 bladder cancers for whom perioperative chemotherapy use and disease recurrence status were known. Whole-exome sequencing was conducted in 43 cases to identify recurrent somatic mutations and targeted sequencing of 10 genes selected from the initial screening in an additional 38 cases was completed. Mutational profiles along with clinicopathologic information were correlated with recurrence-free survival (RFS) in the patients.

resultsWe identified recurrent novel somatic mutations in the gene UNC5C (9.9%), in addition to TP53 (40.7%), KDM6A (21.0%), and TSC1 (12.3%). Patients who were carriers of somatic mutations in DNA repair genes (one or more of ATM, ERCC2, FANCD2, PALB2, BRCA1, or BRCA2) had a higher overall number of somatic mutations (P = 0.011). Importantly, after a median follow-up of 40.4 months, carriers of somatic mutations (n = 25) in any of these six DNA repair genes had significantly enhanced RFS compared with noncarriers [median, 32.4 vs. 14.8 months; hazard ratio of 0.46, 95% confidence interval (CI), 0.22-0.98; P = 0.0435], after adjustment for pathologic pTN staging and independent of adjuvant chemotherapy usage.

conclusionBetter prognostic outcomes of individuals carrying somatic mutations in DNA repair genes suggest these mutations as favorable prognostic events in muscle-invasive bladder cancer. Additional mechanistic investigation into the previously undiscovered role of UNC5C in bladder cancer is warranted.

Indexed as

DNA RepairExomeMutationAgedAged, 80 and overCluster AnalysisComputational BiologyFemaleHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedNeoplasm InvasivenessNeoplasm StagingNetrin ReceptorsPrognosisNetrin ReceptorsReceptors, Cell SurfaceUNC5C protein, human

Identifiers

PMID25316812
PMCPMC4268280
OpenAlexW2133614753

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.