Evidence map›Paper›PMID 25316790›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes.

Ashley J Pratt, David S Shin, Gregory E Merz, Robert P Rambo, W Andrew Lancaster, Kevin N Dyer, Peter P Borbat, Farris L Poole, Michael W W Adams, Jack H Freed and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
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  12. Copper homeostasis and cuproptosis in health and disease.Signal transduction and targeted therapy · 2022
    Review
  13. Article
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  18. Review
  19. Article
  20. Haplotype Analysis of the First A4V-Frontiers in genetics · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Ashley J PrattDepartment of Integrative Structural and Computational Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; Life Sciences and.
David S ShinDepartment of Integrative Structural and Computational Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; Life Sciences and.
Gregory E MerzDepartment of Chemistry and Chemical Biology and.
Robert P RamboPhysical Biosciences Divisions, Lawrence Berkeley National Laboratory, Berkeley, CA 94720;
W Andrew LancasterDepartment of Biochemistry, University of Georgia, Athens, GA 30602.
Kevin N DyerPhysical Biosciences Divisions, Lawrence Berkeley National Laboratory, Berkeley, CA 94720;
Peter P BorbatCenter for Advanced ESR Studies (ACERT), Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853-1301; and.
Farris L PooleDepartment of Biochemistry, University of Georgia, Athens, GA 30602.
Michael W W AdamsDepartment of Biochemistry, University of Georgia, Athens, GA 30602.
Jack H FreedCenter for Advanced ESR Studies (ACERT), Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853-1301; and.
Brian R CraneDepartment of Chemistry and Chemical Biology and.
John A TainerDepartment of Integrative Structural and Computational Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; Life Sciences and jat@scripps.edu edg@scripps.edu.
Elizabeth D GetzoffDepartment of Integrative Structural and Computational Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037; jat@scripps.edu edg@scripps.edu.
Scripps Research Institute · USUniversity of Georgia · USCornell University · USLawrence Berkeley National Laboratory · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
X-BAND PULSE ESR SPECTROMETER FOR STUDY OF LOW-TEMPERATURE IMPURITY-HELIUM P41RR016292 · NCRR · CORNELL UNIVERSITY ITHACA · PI BORBAT, PETER P · 2001 to 2011
$14.3M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
TR&D 4 for ACERT, 2017-2021 funding periodP41GM103521 · NIGMS · CORNELL UNIVERSITY · PI FREED, JACK H · 2012 to 2021
$11.7M
TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
The Structure and Function of the Bacterial ChemosomeR01GM066775 · NIGMS · CORNELL UNIVERSITY ITHACA · PI CRANE, BRIAN R · 2003 to 2016
$4.3M
SUPEROXIDE DISMUTASE STRUCTURES AND LOU GEHRIGS DISEASER01GM039345 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GETZOFF, ELIZABETH D, TAINER, JOHN A. · 1988 to 2013
$1.9M
NCRR NIH HHS 2P41RR017573NCRR NIH HHS P41 RR016292NCRR NIH HHS P41RR016292NCRR NIH HHS P41 RR017573NIA NIH HHS T32 AG000266NIA NIH HHS T32AG000266NIGMS NIH HHS 9P41GM103310NIGMS NIH HHS P41 GM103310NIGMS NIH HHS P41 GM103521NIGMS NIH HHS P41GM103521NIGMS NIH HHS R01 GM039345NIGMS NIH HHS R01GM039345NIGMS NIH HHS R01 GM066775NIGMS NIH HHS R01GM066775NIGMS NIH HHS T32 GM008267NIGMS NIH HHS T32GM008267
6 · The paper itself

Abstract

Protein framework alterations in heritable Cu, Zn superoxide dismutase (SOD) mutants cause misassembly and aggregation in cells affected by the motor neuron disease ALS. However, the mechanistic relationship between superoxide dismutase 1 (SOD1) mutations and human disease is controversial, with many hypotheses postulated for the propensity of specific SOD mutants to cause ALS. Here, we experimentally identify distinguishing attributes of ALS mutant SOD proteins that correlate with clinical severity by applying solution biophysical techniques to six ALS mutants at human SOD hotspot glycine 93. A small-angle X-ray scattering (SAXS) assay and other structural methods assessed aggregation propensity by defining the size and shape of fibrillar SOD aggregates after mild biochemical perturbations. Inductively coupled plasma MS quantified metal ion binding stoichiometry, and pulsed dipolar ESR spectroscopy evaluated the Cu(2+) binding site and defined cross-dimer copper-copper distance distributions. Importantly, we find that copper deficiency in these mutants promotes aggregation in a manner strikingly consistent with their clinical severities. G93 mutants seem to properly incorporate metal ions under physiological conditions when assisted by the copper chaperone but release copper under destabilizing conditions more readily than the WT enzyme. Altered intradimer flexibility in ALS mutants may cause differential metal retention and promote distinct aggregation trends observed for mutant proteins in vitro and in ALS patients. Combined biophysical and structural results test and link copper retention to the framework destabilization hypothesis as a unifying general mechanism for both SOD aggregation and ALS disease progression, with implications for disease severity and therapeutic intervention strategies.

Indexed as

AcidsAmyotrophic Lateral SclerosisCopperCrystallography, X-RayEdetic AcidHumansModels, MolecularMutant ProteinsMutationPhenotypeProtective AgentsProtein Aggregation, PathologicalScattering, Small AngleSolutionsSuperoxide DismutaseSuperoxide Dismutase-1AcidsCopperEdetic AcidMutant ProteinsProtective AgentsSOD1 protein, humanSolutionsSuperoxide DismutaseSuperoxide Dismutase-1ESR spectroscopyLou Gehrig’s diseaseprotein aggregationprotein conformationsmall-angle X-ray scattering

Identifiers

PMID25316790
PMCPMC4217430
OpenAlexW2134441064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.