Evidence map›Paper›PMID 25315777›Full record

ArticleThe Journal of biological chemistry2014

Novel mechanism of hemin capture by Hbp2, the hemoglobin-binding hemophore from Listeria monocytogenes.

G Reza Malmirchegini, Megan Sjodt, Sergey Shnitkind, Michael R Sawaya, Justin Rosinski, Salete M Newton, Phillip E Klebba, Robert T Clubb

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Rli51 Attenuates Transcription of theInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Effect of anti-biofilm peptideFrontiers in cellular and infection microbiology · 2024
    Article
  5. Review
  6. Article
  7. Pirates of the haemoglobin.Microbial cell (Graz, Austria) · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. TheThe Journal of biological chemistry · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Heme Synthesis and Acquisition in Bacterial Pathogens.Journal of molecular biology · 2016
    Review
  17. Iron and zinc exploitation during bacterial pathogenesis.Metallomics : integrated biometal science · 2015
    Review
  18. Article
  19. An update on the transport and metabolism of iron in Listeria monocytogenes: the role of proteins involved in pathogenicity.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

G Reza MalmircheginiFrom the Department of Chemistry and Biochemistry and the UCLA-Department of Energy Institute for Genomics and Proteomics, UCLA, Los Angeles, California 90095 and.
Megan SjodtFrom the Department of Chemistry and Biochemistry and the UCLA-Department of Energy Institute for Genomics and Proteomics, UCLA, Los Angeles, California 90095 and.
Sergey ShnitkindFrom the Department of Chemistry and Biochemistry and the UCLA-Department of Energy Institute for Genomics and Proteomics, UCLA, Los Angeles, California 90095 and.
Michael R SawayaFrom the Department of Chemistry and Biochemistry and the UCLA-Department of Energy Institute for Genomics and Proteomics, UCLA, Los Angeles, California 90095 and Howard Hughes Medical Institute and.
Justin RosinskiFrom the Department of Chemistry and Biochemistry and the UCLA-Department of Energy Institute for Genomics and Proteomics, UCLA, Los Angeles, California 90095 and.
Salete M NewtonDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas 66502.
Phillip E KlebbaDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas 66502.
Robert T ClubbFrom the Department of Chemistry and Biochemistry and the UCLA-Department of Energy Institute for Genomics and Proteomics, UCLA, Los Angeles, California 90095 and rclubb@mbi.ucla.edu.
Energy Institute · GBKansas State University · USHoward Hughes Medical Institute · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
Cell Surface Protein Anchoring in Gram-Positive BacteriaR01AI052217 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Robert Thompson Clubb · 2002 to 2026
$8.5M
LOOP DELETION MUTAGENESIS OF FEPAR01GM053836 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI KLEBBA, PHILLIP E · 1995 to 2009
$2.4M
Hemoglobin Capture and Heme Acquisition by the Pathogen Staphylococcus AureusF31GM101931 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SJODT, MEGAN MARIE · 2012 to 2016
$158k
NIAID NIH HHS R01 AI052217NIAID NIH HHS R01 AI52217NIGMS NIH HHS F31 GM101931NIGMS NIH HHS F31GM101931NIGMS NIH HHS R01 GM053836NIGMS NIH HHS R01 GM53836NIGMS NIH HHS T32 GM007185
6 · The paper itself

Abstract

Iron is an essential nutrient that is required for the growth of the bacterial pathogen Listeria monocytogenes. In cell cultures, this microbe secretes hemin/hemoglobin-binding protein 2 (Hbp2; Lmo2185) protein, which has been proposed to function as a hemophore that scavenges heme from the environment. Based on its primary sequence, Hbp2 contains three NEAr transporter (NEAT) domains of unknown function. Here we show that each of these domains mediates high affinity binding to ferric heme (hemin) and that its N- and C-terminal domains interact with hemoglobin (Hb). The results of hemin transfer experiments are consistent with Hbp2 functioning as an Hb-binding hemophore that delivers hemin to other Hbp2 proteins that are attached to the cell wall. Surprisingly, our work reveals that the central NEAT domain in Hbp2 binds hemin even though its primary sequence lacks a highly conserved YXXXY motif that is used by all other previously characterized NEAT domains to coordinate iron in the hemin molecule. To elucidate the mechanism of hemin binding by Hbp2, we determined crystal structures of its central NEAT domain (Hbp2(N2); residues 183-303) in its free and hemin-bound states. The structures reveal an unprecedented mechanism of hemin binding in which Hbp2(N2) undergoes a major conformational rearrangement that facilitates metal coordination by a non-canonical tyrosine residue. These studies highlight previously unrecognized plasticity in the hemin binding mechanism of NEAT domains and provide insight into how L. monocytogenes captures heme iron.

Indexed as

Amino Acid SequenceBacterial ProteinsCrystallography, X-RayHeminHemoglobinsHumansKineticsListeria monocytogenesModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, TertiaryBacterial ProteinsHeminHemoglobinsBacterial PathogenesisHemeHemoglobinIronX-ray Crystallography

Identifiers

PMID25315777
PMCPMC4263887
OpenAlexW2000991144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.