Evidence map›Paper›PMID 25315765›Full record

ArticleGenome biology2014

Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer.

Lincoln D Nadauld, Sarah Garcia, Georges Natsoulis, John M Bell, Laura Miotke, Erik S Hopmans, Hua Xu, Reetesh K Pai, Curt Palm, John F Regan and 7 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 1 synthesis or guideline pooled it, 133 citations in OpenAlex.

  1. Pooled it
  2. Mapping the genetic landscape of hereditary diffuse-type gastric cancer progression.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Significance of dysregulated M2 macrophage andTranslational cancer research · 2024
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. 3D cancer models: One step closer toFrontiers in immunology · 2023
    Review
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Lincoln D Nadauld
Sarah Garcia
Georges Natsoulis
John M Bell
Laura Miotke
Erik S Hopmans
Hua Xu
Reetesh K Pai
Curt Palm
John F Regan
Hao Chen
Patrick Flaherty
Akifumi Ootani
Nancy R Zhang
James M Ford
Calvin J Kuo
Hanlee P Ji
Stanford University · USBio-Rad (United States) · USUniversity of Pennsylvania · USUniversity of Pittsburgh Medical Center · US

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI HOWE, ROGER THOMAS, JI, HANLEE P · 1990 to 2016
$120.9M
Proteomics/GenomicsP30DK056339 · NIDDK · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2001 to 2010
$10.4M
Regulation of actively proliferating and quiescent intestinal stem cellsU01DK085527 · NIDDK · STANFORD UNIVERSITY · PI KUO, CALVIN J · 2009 to 2023
$6.9M
Intestinal Stem Cell Consortium Coordinating CenterU01DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2009 to 2018
$6.5M
Statistical Models for Genome Sequencing and AssociationR01HG006137 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JI, HANLEE P, ZHANG, NANCY R · 2011 to 2022
$4.3M
Functional Analysis of Oncogenic Networks in Primary OrganoidsU01CA176299 · NCI · STANFORD UNIVERSITY · PI JI, HANLEE P, KUO, CALVIN J · 2013 to 2016
$3.6M
A Strategy for High Quality Clinical Resequencing of the Human GenomeRC2HG005570 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2009 to 2010
$2.8M
Integrated Genomic Discovery and Functional Validation of Colorectal Cancer LociU01CA151920 · NCI · STANFORD UNIVERSITY · PI JI, HANLEE P, KUO, CALVIN J · 2011 to 2015
$2.6M
Limited Competition for the Continuation of the Intestinal Stem Cell Consortium Coordinating CenterU24DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2019 to 2023
$2.3M
Postdoctoral Training in the Radiation ScincesT32CA121940 · NCI · STANFORD UNIVERSITY · PI GRAVES, EDWARD E. · 2007 to 2018
$2.1M
Oligonucleotide-Selective Sequencing for integrated and rapid cancer genome analyR33CA174575 · NCI · STANFORD UNIVERSITY · PI JI, HANLEE P · 2013 to 2015
$1.1M
An Integrated Approach to the Validation of Novel Gastric Cancer OncogenesK08CA166512 · NCI · STANFORD UNIVERSITY · PI NADAULD, LINCOLN D. · 2012 to 2016
$689k
NCI NIH HHS 1R33CA1745701NCI NIH HHS 1U01CA151920NCI NIH HHS K08 CA166512NCI NIH HHS R33 CA174575NCI NIH HHS T32 CA121940NCI NIH HHS U01 CA151920NCI NIH HHS U01 CA176299NCI NIH HHS U01CA17629901NHGRI NIH HHS HG005570NHGRI NIH HHS P01 HG000205NHGRI NIH HHS R01 HG006137NHGRI NIH HHS RC2 HG005570NIDDK NIH HHS 1U01DK085527NIDDK NIH HHS DK56339NIDDK NIH HHS P30 DK056339NIDDK NIH HHS U01 DK085527NIDDK NIH HHS U01 DK085532NIDDK NIH HHS U24 DK085532
6 · The paper itself

Abstract

backgroundGastric cancer is the second-leading cause of global cancer deaths, with metastatic disease representing the primary cause of mortality. To identify candidate drivers involved in oncogenesis and tumor evolution, we conduct an extensive genome sequencing analysis of metastatic progression in a diffuse gastric cancer. This involves a comparison between a primary tumor from a hereditary diffuse gastric cancer syndrome proband and its recurrence as an ovarian metastasis.

resultsBoth the primary tumor and ovarian metastasis have common biallelic loss-of-function of both the CDH1 and TP53 tumor suppressors, indicating a common genetic origin. While the primary tumor exhibits amplification of the Fibroblast growth factor receptor 2 (FGFR2) gene, the metastasis notably lacks FGFR2 amplification but rather possesses unique biallelic alterations of Transforming growth factor-beta receptor 2 (TGFBR2), indicating the divergent in vivo evolution of a TGFBR2-mutant metastatic clonal population in this patient. As TGFBR2 mutations have not previously been functionally validated in gastric cancer, we modeled the metastatic potential of TGFBR2 loss in a murine three-dimensional primary gastric organoid culture. The Tgfbr2 shRNA knockdown within Cdh1-/-; Tp53-/- organoids generates invasion in vitro and robust metastatic tumorigenicity in vivo, confirming Tgfbr2 metastasis suppressor activity.

conclusionsWe document the metastatic differentiation and genetic heterogeneity of diffuse gastric cancer and reveal the potential metastatic role of TGFBR2 loss-of-function. In support of this study, we apply a murine primary organoid culture method capable of recapitulating in vivo metastatic gastric cancer. Overall, we describe an integrated approach to identify and functionally validate putative cancer drivers involved in metastasis.

Indexed as

Evolution, MolecularAdultAnimalsAntigens, CDCadherinsFemaleGenetic VariationHumansKrukenberg TumorMiceMice, TransgenicMolecular Sequence DataNeoplasms, ExperimentalOvarian NeoplasmsProtein Serine-Threonine KinasesReceptor, Fibroblast Growth Factor, Type 2Antigens, CDCadherinsCDH1 protein, humanFGFR2 protein, humanProtein Serine-Threonine KinasesReceptor, Fibroblast Growth Factor, Type 2Receptors, Transforming Growth Factor betaReceptor, Transforming Growth Factor-beta Type IITP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID25315765
PMCPMC4145231
OpenAlexW2097415882

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.