Evidence map›Paper›PMID 25315378›Full record

ArticlePathology oncology research : POR2015

Mutations in g protein encoding genes and chromosomal alterations in primary leptomeningeal melanocytic neoplasms.

Heidi V N Küsters-Vandevelde, Ilse A C H van Engen-van Grunsven, Sarah E Coupland, Sarah L Lake, Jos Rijntjes, Rolph Pfundt, Benno Küsters, Pieter Wesseling, Willeke A M Blokx, Patricia J T A Groenen

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In one paragraph

Article in Pathology oncology research : POR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Primary Melanocytomas of the Spinal Cord: Case Studies and Rehabilitation Perspectives.Archives of rehabilitation research and clinical translation · 2021
    Article
  7. Article
  8. Combined Inhibition of GαClinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  9. New and evolving concepts of melanocytic nevi and melanocytomas.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Review
  10. Article
  11. Article
  12. Atypical activation of the G protein GαThe Journal of biological chemistry · 2018
    Article
  13. Article
  14. Review
  15. Diagnosing a Primary Leptomeningeal Melanoma by Gene Mutation Signature.The Journal of investigative dermatology · 2016
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Heidi V N Küsters-VandeveldeDepartment of Pathology, C66, Canisius Wilhelmina Hospital, P.O. Box 9015, 6500 GS, Nijmegen, The Netherlands, h.kusters@cwz.nl.
Ilse A C H van Engen-van Grunsven
Sarah E Coupland
Sarah L Lake
Jos Rijntjes
Rolph Pfundt
Benno Küsters
Pieter Wesseling
Willeke A M Blokx
Patricia J T A Groenen
Radboud University Medical Center · NLCanisius-Wilhelmina Ziekenhuis · NLUniversity of Liverpool · GBMaastricht University · NLRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Limited data is available on the genetic features of primary leptomeningeal melanocytic neoplasms (LMNs). Similarities with uveal melanoma were recently suggested as both entities harbor oncogenic mutations in GNAQ and GNA11. Whether primary LMNs share additional genetic alterations with uveal melanoma including copy number variations is unknown. Twenty primary LMNs ranging from benign and intermediate-grade melanocytomas to melanomas were tested by direct sequencing for hotspot mutations in the genes GNA11, GNAQ, BRAF, NRAS and HRAS. Furthermore, the lesions were tested for copy number variations of chromosomes frequently present in uveal melanoma (1p, 3, 6 and 8q) by multiplex ligation-dependent probe amplification (MLPA). Genome-wide analyses of copy number alterations of two leptomeningeal melanocytic neoplasms were performed using the OncoScan SNP-array. GNAQ(Q209) mutations were present in eleven LMNs, while two of 20 cases carried a GNA11(Q209) mutation. No BRAF, HRAS or NRAS hotspot mutations were detected. Monosomy 3 and gain of 8q were present in one leptomeningeal melanoma, and one intermediate-grade melanocytoma harbored a gain of chromosome 6. With MLPA, the melanocytomas did not show any further gross chromosomal variations. Our data shows that primary LMNs, like uveal melanoma, harbor oncogenic mutations in GNAQ and GNA11 but lack mutations in BRAF, NRAS and HRAS. This finding may help in the differential diagnosis between a primary LMN and a metastasis from a cutaneous melanoma to the central nervous system. Copy number variations in some aggressive LMNs resemble those present in uveal melanoma but their prognostic significance is unclear.

Indexed as

Chromosome AberrationsAdultAgedCohort StudiesDNA Copy Number VariationsFemaleGenes, NeoplasmGTP-Binding Protein alpha SubunitsGTP-Binding Protein alpha Subunits, Gq-G11GTP-Binding ProteinsHumansMaleMelanocytesMelanomaMeningeal NeoplasmsMiddle AgedGNA11 protein, humanGNAQ protein, humanGTP-Binding Protein alpha SubunitsGTP-Binding Protein alpha Subunits, Gq-G11GTP-Binding Proteins

Identifiers

PMID25315378
OpenAlexW2032240223

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.