Evidence map›Paper›PMID 25315136›Full record

ArticleGenome biology2014

Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment.

Jeffrey G Scott, Wesley C Warren, Leo W Beukeboom, Daniel Bopp, Andrew G Clark, Sarah D Giers, Monika Hediger, Andrew K Jones, Shinji Kasai, Cheryl A Leichter and 16 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed, 1 pooled it
12.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 1 synthesis or guideline pooled it, 305 citations in OpenAlex.

  1. Pooled it
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  17. The GPCR A35 regulates fecundity ofFrontiers in insect science · 2025
    Article
  18. Article
  19. bioRxiv : the preprint server for biology · 2024
    Article
  20. eLife · 2024
    Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 12 institutions in 4 countries.

Jeffrey G ScottDepartment of Entomology, Comstock Hall, Cornell University, Ithaca, NY, USA. jgs5@cornell.edu
Wesley C Warren
Leo W Beukeboom
Daniel Bopp
Andrew G Clark
Sarah D Giers
Monika Hediger
Andrew K Jones
Shinji Kasai
Cheryl A Leichter
Ming Li
Richard P Meisel
Patrick Minx
Terence D Murphy
David R Nelson
William R Reid
Frank D Rinkevich
Hugh M Robertson
Timothy B Sackton
David B Sattelle
Francoise Thibaud-Nissen
Chad Tomlinson
Louis van de Zande
Kimberly K O Walden
Richard K Wilson
Nannan Liu
Cornell University · USWashington University in St. Louis · USAuburn University · USUniversity of Illinois Urbana-Champaign · USUnited States Department of Health and Human Services · USUniversity of Groningen · NLUniversity of Zurich · CHHarvard University · USOxford Brookes University · GBUniversity College London · GBUniversity of Houston · USUniversity of Tennessee Health Science Center · US

Funding

Functional /Comparative Genomic of Drosophila immunityR01AI064950 · NIAID · CORNELL UNIVERSITY ITHACA · PI CLARK, ANDREW G, LAZZARO, BRIAN · 2005 to 2016
$3.7M
NHGRI NIH HHS 5U54HG00307907NIAID NIH HHS R01 AI064950
6 · The paper itself

Abstract

backgroundAdult house flies, Musca domestica L., are mechanical vectors of more than 100 devastating diseases that have severe consequences for human and animal health. House fly larvae play a vital role as decomposers of animal wastes, and thus live in intimate association with many animal pathogens.

resultsWe have sequenced and analyzed the genome of the house fly using DNA from female flies. The sequenced genome is 691 Mb. Compared with Drosophila melanogaster, the genome contains a rich resource of shared and novel protein coding genes, a significantly higher amount of repetitive elements, and substantial increases in copy number and diversity of both the recognition and effector components of the immune system, consistent with life in a pathogen-rich environment. There are 146 P450 genes, plus 11 pseudogenes, in M. domestica, representing a significant increase relative to D. melanogaster and suggesting the presence of enhanced detoxification in house flies. Relative to D. melanogaster, M. domestica has also evolved an expanded repertoire of chemoreceptors and odorant binding proteins, many associated with gustation.

conclusionsThis represents the first genome sequence of an insect that lives in intimate association with abundant animal pathogens. The house fly genome provides a rich resource for enabling work on innovative methods of insect control, for understanding the mechanisms of insecticide resistance, genetic adaptation to high pathogen loads, and for exploring the basic biology of this important pest. The genome of this species will also serve as a close out-group to Drosophila in comparative genomic studies.

Indexed as

Adaptation, PhysiologicalGenomeAnimalsBase SequenceDrosophila melanogasterFemaleHousefliesInsect VectorsMolecular Sequence AnnotationMolecular Sequence DataPhylogenySequence Analysis, DNASequence Homology, Nucleic Acid

Identifiers

PMID25315136
PMCPMC4195910
OpenAlexW2117904019

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.