Evidence map›Paper›PMID 25313394›Full record

ArticleJournal of bacteriology2015

Comparative analysis of kdp and ktr mutants reveals distinct roles of the potassium transporters in the model cyanobacterium Synechocystis sp. strain PCC 6803.

Kei Nanatani, Toshiaki Shijuku, Yousuke Takano, Lalu Zulkifli, Tomoko Yamazaki, Akira Tominaga, Satoshi Souma, Kiyoshi Onai, Megumi Morishita, Masahiro Ishiura and 5 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 53 citations in OpenAlex.

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  20. Bacteria in solitary confinement.Journal of bacteriology · 2015
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Kei NanataniDepartment of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan.
Toshiaki ShijukuDepartment of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan.
Yousuke TakanoDepartment of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan.
Lalu ZulkifliDepartment of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan.
Tomoko YamazakiSchool of Agricultural Sciences, Nagoya University, Nagoya, Japan.
Akira TominagaDepartment of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan.
Satoshi SoumaDepartment of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan.
Kiyoshi OnaiCenter for Gene Research, Nagoya University, Nagoya, Japan.
Megumi MorishitaCenter for Gene Research, Nagoya University, Nagoya, Japan.
Masahiro IshiuraCenter for Gene Research, Nagoya University, Nagoya, Japan.
Martin HagemannDepartment of Plant Physiology, University of Rostock, Rostock, Germany.
Iwane SuzukiFaculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan.
Hisataka MaruyamaDepartment of Micro-Nano Systems Engineering, Graduate School of Engineering, Nagoya University, Nagoya, Japan.
Fumihito AraiDepartment of Micro-Nano Systems Engineering, Graduate School of Engineering, Nagoya University, Nagoya, Japan.
Nobuyuki UozumiDepartment of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan uozumi@biophy.che.tohoku.ac.jp.
Tohoku University · JPNagoya University · JPUniversity of Rostock · DEUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photoautotrophic bacteria have developed mechanisms to maintain K(+) homeostasis under conditions of changing ionic concentrations in the environment. Synechocystis sp. strain PCC 6803 contains genes encoding a well-characterized Ktr-type K(+) uptake transporter (Ktr) and a putative ATP-dependent transporter specific for K(+) (Kdp). The contributions of each of these K(+) transport systems to cellular K(+) homeostasis have not yet been defined conclusively. To verify the functionality of Kdp, kdp genes were expressed in Escherichia coli, where Kdp conferred K(+) uptake, albeit with lower rates than were conferred by Ktr. An on-chip microfluidic device enabled monitoring of the biphasic initial volume recovery of single Synechocystis cells after hyperosmotic shock. Here, Ktr functioned as the primary K(+) uptake system during the first recovery phase, whereas Kdp did not contribute significantly. The expression of the kdp operon in Synechocystis was induced by extracellular K(+) depletion. Correspondingly, Kdp-mediated K(+) uptake supported Synechocystis cell growth with trace amounts of external potassium. This induction of kdp expression depended on two adjacent genes, hik20 and rre19, encoding a putative two-component system. The circadian expression of kdp and ktr peaked at subjective dawn, which may support the acquisition of K(+) required for the regular diurnal photosynthetic metabolism. These results indicate that Kdp contributes to the maintenance of a basal intracellular K(+) concentration under conditions of limited K(+) in natural environments, whereas Ktr mediates fast potassium movements in the presence of greater K(+) availability. Through their distinct activities, both Ktr and Kdp coordinate the responses of Synechocystis to changes in K(+) levels under fluctuating environmental conditions.

Indexed as

Bacterial ProteinsBiological TransportCation Transport ProteinsGene Expression Regulation, BacterialOperonPotassiumSynechocystisBacterial ProteinsCation Transport ProteinsPotassium

Identifiers

PMID25313394
PMCPMC4334184
OpenAlexW2157794377

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.