Evidence map›Paper›PMID 25313051›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Whole-genome sequencing analysis of phenotypic heterogeneity and anticipation in Li-Fraumeni cancer predisposition syndrome.

Hany Ariffin, Pierre Hainaut, Anna Puzio-Kuter, Soo Sin Choong, Adelyne Sue Li Chan, Denis Tolkunov, Gunaretnam Rajagopal, Wenfeng Kang, Leon Li Wen Lim, Shekhar Krishnan and 6 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02289326 (Biomarker Monitoring for a Young Individual Carrying a TP53 Gene Mutation in a Familial High-Cancer Predisposition Setting), which is not on this map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02289326 completednot on this map

Biomarker Monitoring for a Young Individual Carrying a TP53 Gene Mutation in a Familial High-Cancer Predisposition Setting

TypeobservationalSponsorScripps HealthRan2014 to 2016Enrolled6ConditionsLi-Fraumeni Syndrome, Hereditary Cancer Syndromes, TP53 Gene Germline Mutation Carrier
3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Li-Fraumeni syndrome heterogeneity.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2020
    Review
  8. Review
  9. Hematologic malignancies and Li-Fraumeni syndrome.Cold Spring Harbor molecular case studies · 2019
    Review
  10. Article
  11. Rlip depletion prevents spontaneous neoplasia in TP53 null mice.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. RareNPJ genomic medicine · 2018
    Article
  13. Article
  14. Article
  15. The Role of the p53 Protein in Stem-Cell Biology and Epigenetic Regulation.Cold Spring Harbor perspectives in medicine · 2016
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 4 countries.

Hany AriffinUniversity of Malaya Cancer Research Institute, University of Malaya, 50603 Kuala Lumpur, Malaysia; Paediatric Haematology-Oncology Unit, University of Malaya Medical Centre, Kuala Lumpur, Malaysia;
Pierre HainautInternational Prevention Research Institute, 69006 Lyon, France; Institut Albert Bonniot-Institut National de la Santé et de la Recherche Médicale 823, University Grenoble-Alpes, 38706 Grenoble, France;
Anna Puzio-KuterRutgers Cancer Institute of New Jersey, New Brunswick, NJ 08901;
Soo Sin ChoongPaediatric Haematology-Oncology Unit, University of Malaya Medical Centre, Kuala Lumpur, Malaysia;
Adelyne Sue Li ChanPaediatric Haematology-Oncology Unit, University of Malaya Medical Centre, Kuala Lumpur, Malaysia;
Denis TolkunovRutgers Cancer Institute of New Jersey, New Brunswick, NJ 08901;
Gunaretnam RajagopalRutgers Cancer Institute of New Jersey, New Brunswick, NJ 08901;
Wenfeng KangRutgers Cancer Institute of New Jersey, New Brunswick, NJ 08901;
Leon Li Wen LimUniversity of Malaya Cancer Research Institute, University of Malaya, 50603 Kuala Lumpur, Malaysia;
Shekhar KrishnanUniversity of Malaya Cancer Research Institute, University of Malaya, 50603 Kuala Lumpur, Malaysia; Paediatric Haematology-Oncology Unit, University of Malaya Medical Centre, Kuala Lumpur, Malaysia;
Kok-Siong ChenUniversity of Malaya Cancer Research Institute, University of Malaya, 50603 Kuala Lumpur, Malaysia;
Maria Isabel AchatzDepartment of Oncogenetics, International Research Center, AC Camargo Cancer Center, National Institute of Oncogenomics, 01508-010, Sao Paulo, Brazil;
Mawar KarsaUniversity of Malaya Cancer Research Institute, University of Malaya, 50603 Kuala Lumpur, Malaysia;
Jannah ShamsaniUniversity of Malaya Cancer Research Institute, University of Malaya, 50603 Kuala Lumpur, Malaysia;
Arnold J LevineInstitute for Advanced Study, Princeton, NJ 08540; and chanc3@cinj.rutgers.edu alevine@ias.edu.
Chang S ChanRutgers Cancer Institute of New Jersey, New Brunswick, NJ 08901; Department of Medicine, Rutgers Robert Wood Johnson Medical School, New Brunswick, NJ 08903 chanc3@cinj.rutgers.edu alevine@ias.edu.
University of Malaya · MYRutgers, The State University of New Jersey · USRutgers Cancer Institute of New JerseyUniversity Malaya Medical Centre · MYAC Camargo Hospital · BRInstitute for Advanced Study · USInstitut pour l'avancée des biosciences · FR

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Chang S Chan · 1997 to 2026
$94.5M
Scientific ReagentsP01CA087497 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 2000 to 2021
$35.4M
NCI NIH HHS P01 CA087497NCI NIH HHS P30 CA072720
6 · The paper itself

Abstract

The Li-Fraumeni syndrome (LFS) and its variant form (LFL) is a familial predisposition to multiple forms of childhood, adolescent, and adult cancers associated with germ-line mutation in the TP53 tumor suppressor gene. Individual disparities in tumor patterns are compounded by acceleration of cancer onset with successive generations. It has been suggested that this apparent anticipation pattern may result from germ-line genomic instability in TP53 mutation carriers, causing increased DNA copy-number variations (CNVs) with successive generations. To address the genetic basis of phenotypic disparities of LFS/LFL, we performed whole-genome sequencing (WGS) of 13 subjects from two generations of an LFS kindred. Neither de novo CNV nor significant difference in total CNV was detected in relation with successive generations or with age at cancer onset. These observations were consistent with an experimental mouse model system showing that trp53 deficiency in the germ line of father or mother did not increase CNV occurrence in the offspring. On the other hand, individual records on 1,771 TP53 mutation carriers from 294 pedigrees were compiled to assess genetic anticipation patterns (International Agency for Research on Cancer TP53 database). No strictly defined anticipation pattern was observed. Rather, in multigeneration families, cancer onset was delayed in older compared with recent generations. These observations support an alternative model for apparent anticipation in which rare variants from noncarrier parents may attenuate constitutive resistance to tumorigenesis in the offspring of TP53 mutation carriers with late cancer onset.

Indexed as

Anticipation, GeneticGenetic HeterogeneityGenetic Predisposition to DiseaseAdultAge of OnsetAnimalsChildChromosome SegregationComparative Genomic HybridizationDNA Copy Number VariationsExomeFamily CharacteristicsFemaleGenome, HumanGerm-Line MutationHeterozygoteTumor Suppressor Protein p53copy number variationgenetic anticipationLi–Fraumeni syndromep53 mutationwhole genome sequencing

Identifiers

PMID25313051
PMCPMC4217424
OpenAlexW2127163387

What OpenQuestion holds

Textmetadata
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.