Evidence map›Paper›PMID 25311859›Full record

ArticleJournal of molecular biology2014

Rad23 interaction with the proteasome is regulated by phosphorylation of its ubiquitin-like (UbL) domain.

Ruei-Yue Liang, Li Chen, Bo-Ting Ko, Yu-Han Shen, Yen-Te Li, Bo-Rong Chen, Kuan-Ting Lin, Kiran Madura, Show-Mei Chuang

Abstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 42 citations in OpenAlex.

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  18. Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation?BioEssays : news and reviews in molecular, cellular and developmental biology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ruei-Yue LiangInstitute of Biomedical Sciences, National Chung Hsing University, Taichung 40227, Taiwan.
Li ChenDepartment of Pharmacology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA.
Bo-Ting KoInstitute of Biomedical Sciences, National Chung Hsing University, Taichung 40227, Taiwan.
Yu-Han ShenInstitute of Biomedical Sciences, National Chung Hsing University, Taichung 40227, Taiwan.
Yen-Te LiInstitute of Biomedical Sciences, National Chung Hsing University, Taichung 40227, Taiwan.
Bo-Rong ChenInstitute of Biomedical Sciences, National Chung Hsing University, Taichung 40227, Taiwan.
Kuan-Ting LinInstitute of Biomedical Sciences, National Chung Hsing University, Taichung 40227, Taiwan.
Kiran MaduraDepartment of Pharmacology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA. Electronic address: maduraki@rwjms.rutgers.edu.
Show-Mei ChuangInstitute of Biomedical Sciences, National Chung Hsing University, Taichung 40227, Taiwan. Electronic address: smchuang@dragon.nchu.edu.tw.
National Chung Hsing University · TWJohnson University · US

Funding

Rutgers Mass Spectrometry Core for Integrative Neuroscience ResearchP30NS046593 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LOBEL, PETER · 2004 to 2018
$9.9M
FUNCTIONAL ANALYSIS OF RAD23 PROTEINR01CA083875 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI MADURA, KIRAN · 2000 to 2016
$4.4M
A Role for Protein Degradation in Nucleotide Excision-RepairR01GM104968 · NIGMS · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI MADURA, KIRAN · 2013 to 2016
$1.2M
NCI NIH HHS CA083875NCI NIH HHS R01 CA083875NIGMS NIH HHS GM104968NIGMS NIH HHS R01 GM104968NINDS NIH HHS NS046593NINDS NIH HHS P30 NS046593
6 · The paper itself

Abstract

Rad23 was identified as a DNA repair protein, although a role in protein degradation has been described. The protein degradation function of Rad23 contributes to cell cycle progression, stress response, endoplasmic reticulum proteolysis, and DNA repair. Rad23 binds the proteasome through a UbL (ubiquitin-like) domain and contains UBA (ubiquitin-associated) motifs that bind multiubiquitin chains. These domains allow Rad23 to function as a substrate shuttle-factor. This property is shared by structurally similar proteins (Dsk2 and Ddi1) and is conserved among the human and mouse counterparts of Rad23. Despite much effort, the regulation of Rad23 interactions with ubiquitinated substrates and the proteasome is unknown. We report here that Rad23 is extensively phosphorylated in vivo and in vitro. Serine residues in UbL are phosphorylated and influence Rad23 interaction with proteasomes. Replacement of these serine residues with acidic residues, to mimic phosphorylation, reduced proteasome binding. We reported that when UbL is overexpressed, it can compete with Rad23 for proteasome interaction and can inhibit substrate turnover. This effect is not observed with UbL containing acidic substitutions, consistent with results that phosphorylation inhibits interaction with the proteasome. Loss of both Rad23 and Rpn10 caused pleiotropic defects that were suppressed by overexpressing either Rad23 or Rpn10. Rad23 bearing a UbL domain with acidic substitutions failed to suppress rad23Δ rpn10Δ, confirming the importance of regulated Rad23/proteasome binding. Strikingly, threonine 75 in human HR23B also regulates interaction with the proteasome, suggesting that phosphorylation is a conserved mechanism for controlling Rad23/proteasome interaction.

Indexed as

DNA RepairAnimalsBinding SitesCell Line, TumorDNA-Binding ProteinsDNA Repair EnzymesHumansImmunoblottingMiceMutationPhosphorylationProteasome Endopeptidase ComplexProteolysisRNA-Binding ProteinsRNA InterferenceSaccharomyces cerevisiaeDNA-Binding ProteinsDNA Repair EnzymesProteasome Endopeptidase ComplexPSMD4 protein, humanRAD23A protein, humanRAD23B protein, humanRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSerineUbiquitindegradationphosphorylationproteasomeRad23UbL

Identifiers

PMID25311859
PMCPMC4258468
OpenAlexW2027462668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.