Evidence map›Paper›PMID 25311806›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2014

Altered peptide ligands revisited: vaccine design through chemically modified HLA-A2-restricted T cell epitopes.

Rieuwert Hoppes, Rimke Oostvogels, Jolien J Luimstra, Kim Wals, Mireille Toebes, Laura Bies, Reggy Ekkebus, Pramila Rijal, Patrick H N Celie, Julie H Huang and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Experimental Data on PIRCHE and T-Cell Reactivity: HLA-DPB1-Derived Peptides Identified by PIRCHE-I Show Binding to HLA-A*02:01 in vitro and T-Cell Activation in vivo.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2024
    Article
  5. Article
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  8. Modified influenza M1NPJ vaccines · 2023
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  9. Article
  10. Article
  11. EnhancedJournal of virology · 2022
    Article
  12. Electrostatically induced pKAmino acids · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. DNA Vaccines-How Far From Clinical Use?International journal of molecular sciences · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 3 countries.

Rieuwert HoppesDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Rimke OostvogelsDepartment of Clinical Chemistry and Haematology, University Medical Center Utrecht, 3584 CX Utrecht, the Netherlands Department of Haematology, University Medical Center Utrecht, 3584 CX Utrecht, the Netherlands;
Jolien J LuimstraDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Kim WalsDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Mireille ToebesDivision of Immunology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Laura BiesDivision of Immunology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Reggy EkkebusDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Pramila RijalDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Patrick H N CelieDivision of Biochemistry, The Netherlands Cancer Institute Protein Facility, 1066 CX Amsterdam, the Netherlands; and.
Julie H HuangDepartment of Clinical Chemistry and Haematology, University Medical Center Utrecht, 3584 CX Utrecht, the Netherlands.
Maarten E EmmelotDepartment of Clinical Chemistry and Haematology, University Medical Center Utrecht, 3584 CX Utrecht, the Netherlands.
Robbert M SpaapenDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Henk LokhorstDepartment of Haematology, University Medical Center Utrecht, 3584 CX Utrecht, the Netherlands;
Ton N M SchumacherDivision of Immunology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Tuna MutisDepartment of Clinical Chemistry and Haematology, University Medical Center Utrecht, 3584 CX Utrecht, the Netherlands.
Boris RodenkoDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands; Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow G12 8TA, United Kingdom b.rodenko@nki.nl h.ovaa@nki.nl.
Huib OvaaDivision of Cell Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands;
Oncode Institute · NLThe Netherlands Cancer Institute · NLUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Virus or tumor Ag-derived peptides that are displayed by MHC class I molecules are attractive starting points for vaccine development because they induce strong protective and therapeutic cytotoxic T cell responses. In thus study, we show that the MHC binding and consequent T cell reactivity against several HLA-A*02 restricted epitopes can be further improved through the incorporation of nonproteogenic amino acids at primary and secondary anchor positions. We screened more than 90 nonproteogenic, synthetic amino acids through a range of epitopes and tested more than 3000 chemically enhanced altered peptide ligands (CPLs) for binding affinity to HLA-A*0201. With this approach, we designed CPLs of viral epitopes, of melanoma-associated Ags, and of the minor histocompatibility Ag UTA2-1, which is currently being evaluated for its antileukemic activity in clinical dendritic cell vaccination trials. The crystal structure of one of the CPLs in complex with HLA-A*0201 revealed the molecular interactions likely responsible for improved binding. The best CPLs displayed enhanced affinity for MHC, increasing MHC stability and prolonging recognition by Ag-specific T cells and, most importantly, they induced accelerated expansion of antitumor T cell frequencies in vitro and in vivo as compared with the native epitope. Eventually, we were able to construct a toolbox of preferred nonproteogenic residues with which practically any given HLA-A*02 restricted epitope can be readily optimized. These CPLs could improve the therapeutic outcome of vaccination strategies or can be used for ex vivo enrichment and faster expansion of Ag-specific T cells for transfer into patients.

Indexed as

Amino Acid SequenceAnimalsAntigens, NeoplasmB-LymphocytesCancer VaccinesCrystallography, X-RayEpitopesGene ExpressionHLA-A2 AntigenHumansImmunizationMiceMice, TransgenicMinor Histocompatibility AntigensModels, MolecularMolecular Sequence DataAntigens, NeoplasmCancer VaccinesEpitopesHLA-A*02:01 antigenHLA-A2 AntigenMinor Histocompatibility AntigensPeptidesRecombinant Proteins

Identifiers

PMID25311806
PMCPMC4226423
OpenAlexW2157973715

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.