Evidence map›Paper›PMID 25311635›Full record

ArticleThe Journal of general physiology2014

Interfacial gating triad is crucial for electromechanical transduction in voltage-activated potassium channels.

Sandipan Chowdhury, Benjamin M Haehnel, Baron Chanda

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. HInternational journal of molecular sciences · 2025
    Review
  4. Article
  5. The EAG Voltage-Dependent KFrontiers in pharmacology · 2020
    Review
  6. Review
  7. Molecular mechanisms of coupling to voltage sensors in voltage-evoked cellular signals.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2019
    Review
  8. Article
  9. Article
  10. Gating mechanism of Kv11.1 (hERG) KPflugers Archiv : European journal of physiology · 2018
    Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sandipan ChowdhuryGraduate Program in Biophysics and Department of Neuroscience, University of Wisconsin, Madison, WI 53705 Graduate Program in Biophysics and Department of Neuroscience, University of Wisconsin, Madison, WI 53705.
Benjamin M HaehnelGraduate Program in Biophysics and Department of Neuroscience, University of Wisconsin, Madison, WI 53705 Graduate Program in Biophysics and Department of Neuroscience, University of Wisconsin, Madison, WI 53705.
Baron ChandaGraduate Program in Biophysics and Department of Neuroscience, University of Wisconsin, Madison, WI 53705 Graduate Program in Biophysics and Department of Neuroscience, University of Wisconsin, Madison, WI 53705 chanda@wisc.edu.
University of Wisconsin–Madison · US

Funding

Thermodynamics and Energetics of voltage-gated ion channelsR01NS081293 · NINDS · WASHINGTON UNIVERSITY · PI CHANDA, BARON · 2012 to 2019
$2.9M
NINDS NIH HHS R01 NS081293NINDS NIH HHS R01NS081293
6 · The paper itself

Abstract

Voltage-dependent potassium channels play a crucial role in electrical excitability and cellular signaling by regulating potassium ion flux across membranes. Movement of charged residues in the voltage-sensing domain leads to a series of conformational changes that culminate in channel opening in response to changes in membrane potential. However, the molecular machinery that relays these conformational changes from voltage sensor to the pore is not well understood. Here we use generalized interaction-energy analysis (GIA) to estimate the strength of site-specific interactions between amino acid residues putatively involved in the electromechanical coupling of the voltage sensor and pore in the outwardly rectifying KV channel. We identified candidate interactors at the interface between the S4-S5 linker and the pore domain using a structure-guided graph theoretical approach that revealed clusters of conserved and closely packed residues. One such cluster, located at the intracellular intersubunit interface, comprises three residues (arginine 394, glutamate 395, and tyrosine 485) that interact with each other. The calculated interaction energies were 3-5 kcal, which is especially notable given that the net free-energy change during activation of the Shaker KV channel is ∼14 kcal. We find that this triad is delicately maintained by balance of interactions that are responsible for structural integrity of the intersubunit interface while maintaining sufficient flexibility at a critical gating hinge for optimal transmission of force to the pore gate.

Indexed as

Ion Channel GatingMolecular Dynamics SimulationAmino Acid SequenceAnimalsMolecular Sequence DataProtein Structure, TertiaryShaker Superfamily of Potassium ChannelsStatic ElectricityXenopusShaker Superfamily of Potassium Channels

Identifiers

PMID25311635
PMCPMC4210428
OpenAlexW2117516463

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.