ArticlePlant molecular biology2015
Global changes in gene expression, assayed by microarray hybridization and quantitative RT-PCR, during acclimation of three Arabidopsis thaliana accessions to sub-zero temperatures after cold acclimation.
Article in Plant molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 50 citations in OpenAlex.
- Integrated physiological, biochemical, and transcriptomic analysis of the cold-sensitive response in Mussaenda anomala.BMC genomics · 2025Article
- Subtilisin-like protease 4 regulates cold tolerance through cell wall modification in rice.Scientific reports · 2025Article
- Oligogalactolipid production during cold challenge is conserved in early diverging lineages.Journal of experimental botany · 2023Article
- Transcriptome analysis revealed molecular basis of cold response inMolecular breeding : new strategies in plant improvement · 2023Article
- Low-temperature and circadian signals are integrated by the sigma factor SIG5.Nature plants · 2023Article
- Large-scale comparative transcriptomic analysis of temperature-responsive genes in Arabidopsis thaliana.Plant molecular biology · 2022Article
- Transcription-associated metabolomic profiling reveals the critical role of frost tolerance in wheat.BMC plant biology · 2022Article
- Association mapping of autumn-seeded rye (Secale cereale L.) reveals genetic linkages between genes controlling winter hardiness and plant development.Scientific reports · 2022Article
- Reconsidering the function of the xyloglucan endotransglucosylase/hydrolase family.Journal of plant research · 2022Review
- Transcriptomic profiling of wheat stem during meiosis in response to freezing stress.Frontiers in plant science · 2022Article
- Genome-Wide Identification of BananaPlants (Basel, Switzerland) · 2021Article
- ETHYLENE RESPONSE FACTOR39-MYB8 complex regulates low-temperature-induced lignification of loquat fruit.Journal of experimental botany · 2020Article
- Transcriptional and Post-Transcriptional Regulation and Transcriptional Memory of Chromatin Regulators in Response to Low Temperature.Frontiers in plant science · 2020Article
- Short-Term Low Temperature Induces Nitro-Oxidative Stress that Deregulates the NADP-Malic Enzyme Function by Tyrosine Nitration inAntioxidants (Basel, Switzerland) · 2019Article
- Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana.Scientific reports · 2019Article
- Article
- Optimization of Photosynthetic Productivity in Contrasting Environments by Regulons Controlling Plant Form and Function.International journal of molecular sciences · 2018Review
- Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana.BMC genomics · 2017Article
- Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.Plant cell reports · 2016Article
- Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.).Frontiers in plant science · 2016Article
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
During cold acclimation plants increase in freezing tolerance in response to low non-freezing temperatures. This is accompanied by many physiological, biochemical and molecular changes that have been extensively investigated. In addition, plants of many species, including Arabidopsis thaliana, become more freezing tolerant during exposure to mild, non-damaging sub-zero temperatures after cold acclimation. There is hardly any information available about the molecular basis of this adaptation. Here, we have used microarrays and a qRT-PCR primer platform covering 1,880 genes encoding transcription factors (TFs) to monitor changes in gene expression in the Arabidopsis accessions Columbia-0, Rschew and Tenela during the first 3 days of sub-zero acclimation at -3 °C. The results indicate that gene expression during sub-zero acclimation follows a tighly controlled time-course. Especially AP2/EREBP and WRKY TFs may be important regulators of sub-zero acclimation, although the CBF signal transduction pathway seems to be less important during sub-zero than during cold acclimation. Globally, we estimate that approximately 5% of all Arabidopsis genes are regulated during sub-zero acclimation. Particularly photosynthesis-related genes are down-regulated and genes belonging to the functional classes of cell wall biosynthesis, hormone metabolism and RNA regulation of transcription are up-regulated. Collectively, these data provide the first global analysis of gene expression during sub-zero acclimation and allow the identification of candidate genes for forward and reverse genetic studies into the molecular mechanisms of sub-zero acclimation.
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