Evidence map›Paper›PMID 25311051›Full record

ArticleNanoscale2014

High precision and high yield fabrication of dense nanoparticle arrays onto DNA origami at statistically independent binding sites.

Sadao Takabayashi, William P Klein, Craig Onodera, Blake Rapp, Juan Flores-Estrada, Elias Lindau, Lejmarc Snowball, Joseph T Sam, Jennifer E Padilla, Jeunghoon Lee and 5 more

Abstract read
In one paragraph

Article in Nanoscale, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. DNA-Based Assembly of Quantum Dots into Dimers and Helices.Nanomaterials (Basel, Switzerland) · 2019
    Article
  7. Review
  8. CAGE: Chromatin Analogous Gene Expression.ACS synthetic biology · 2017
    Article
  9. Nucleic acid memory.Nature materials · 2016
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sadao TakabayashiDepartment of Materials Science & Engineering, Boise, ID 83725, USA. WillHughes@boisestate.edu.
William P Klein
Craig Onodera
Blake Rapp
Juan Flores-Estrada
Elias Lindau
Lejmarc Snowball
Joseph T Sam
Jennifer E Padilla
Jeunghoon Lee
William B Knowlton
Elton Graugnard
Bernard Yurke
Wan Kuang
William L Hughes

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Scott A Minnich · 2012 to 2026
$59.8M
Low Cost Diagnosis of Disease using Synthetic DNA ReactionsK25GM093233 · NIGMS · BOISE STATE UNIVERSITY · PI HUGHES, WILLIAM L. · 2011 to 2015
$686k
NIGMS NIH HHS K25 GM093233NIGMS NIH HHS K25GM093233NIGMS NIH HHS P20 GM103408
6 · The paper itself

Abstract

High precision, high yield, and high density self-assembly of nanoparticles into arrays is essential for nanophotonics. Spatial deviations as small as a few nanometers can alter the properties of near-field coupled optical nanostructures. Several studies have reported assemblies of few nanoparticle structures with controlled spacing using DNA nanostructures with variable yield. Here, we report multi-tether design strategies and attachment yields for homo- and hetero-nanoparticle arrays templated by DNA origami nanotubes. Nanoparticle attachment yield via DNA hybridization is comparable with streptavidin-biotin binding. Independent of the number of binding sites, >97% site-occupation was achieved with four tethers and 99.2% site-occupation is theoretically possible with five tethers. The interparticle distance was within 2 nm of all design specifications and the nanoparticle spatial deviations decreased with interparticle spacing. Modified geometric, binomial, and trinomial distributions indicate that site-bridging, steric hindrance, and electrostatic repulsion were not dominant barriers to self-assembly and both tethers and binding sites were statistically independent at high particle densities.

Indexed as

Binding SitesDNAGoldMetal NanoparticlesMicroarray AnalysisMicroscopy, Atomic ForceMicrotechnologyNanotechnologyNanotubesNucleic Acid ConformationParticle SizeProbabilityStatic ElectricitySurface PropertiesDNAGold

Identifiers

PMID25311051
PMCPMC4547787

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.