Evidence map›Paper›PMID 25310878›Full record

ArticleJournal of magnetic resonance (San Diego, Calif. : 1997)2014

The spatial effect of protein deuteration on nitroxide spin-label relaxation: implications for EPR distance measurement.

Hassane El Mkami, Richard Ward, Andrew Bowman, Tom Owen-Hughes, David G Norman

Abstract read
In one paragraph

Article in Journal of magnetic resonance (San Diego, Calif. : 1997), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  5. Article
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  9. Quantifying methyl tunneling induced (de)coherence of nitroxides in glassyPhysical chemistry chemical physics : PCCP · 2023
    Article
  10. Quantitative analysis of sterol-modulated monomer-dimer equilibrium of the βProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Time-resolved DEER EPR and solid-state NMR afford kinetic and structural elucidation of substrate binding to CaProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Chemical communications (Cambridge, England) · 2020
    Article
  18. Article
  19. Site-Directed Spin Labeling of RNA with aMolecules (Basel, Switzerland) · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hassane El MkamiSchool of Physics and Astronomy, University of St. Andrews, St. Andrews KY16 9SS, UK.
Richard WardNucleic Acids Structure Research Group, University of Dundee, Dundee DD1 5EH, UK.
Andrew BowmanCentre for Gene Regulation and Expression, University of Dundee, Dundee DD1 5EH, UK.
Tom Owen-HughesCentre for Gene Regulation and Expression, University of Dundee, Dundee DD1 5EH, UK.
David G NormanNucleic Acids Structure Research Group, University of Dundee, Dundee DD1 5EH, UK. Electronic address: d.g.norman@dundee.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/E022286/1Medical Research Council G1100021Wellcome Trust 095062Wellcome Trust 097945
6 · The paper itself

Abstract

Pulsed electron-electron double resonance (PELDOR) coupled with site-directed spin labeling is a powerful technique for the elucidation of protein or nucleic acid, macromolecular structure and interactions. The intrinsic high sensitivity of electron paramagnetic resonance enables measurement on small quantities of bio-macromolecules, however short relaxation times impose a limit on the sensitivity and size of distances that can be measured using this technique. The persistence of the electron spin-echo, in the PELDOR experiment, is one of the most crucial limitations to distance measurement. At a temperature of around 50 K one of the predominant factors affecting persistence of an echo, and as such, the sensitivity and measurable distance between spin labels, is the electron spin echo dephasing time (Tm). It has become normal practice to use deuterated solvents to extend Tm and recently it has been demonstrated that deuteration of the underlying protein significantly extends Tm. Here we examine the spatial effect of segmental deuteration of the underlying protein, and also explore the concentration and temperature dependence of highly deuterated systems.

Indexed as

Amino Acid SequenceDeuteriumDeuterium Exchange MeasurementElectron Spin Resonance SpectroscopyHistonesMolecular Sequence DataNitrogen OxidesReproducibility of ResultsSensitivity and SpecificitySpatio-Temporal AnalysisSpin LabelsDeuteriumHistonesNitrogen OxidesSpin LabelsDEERDeuterationEPRPELDORRelaxationSpin-labelT(m)

Identifiers

PMID25310878
PMCPMC4245719

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.