Evidence map›Paper›PMID 25310466›Full record

ArticlePloS one2014

Detection of the G17V RHOA mutation in angioimmunoblastic T-cell lymphoma and related lymphomas using quantitative allele-specific PCR.

Rie Nakamoto-Matsubara, Mamiko Sakata-Yanagimoto, Terukazu Enami, Kenichi Yoshida, Shintaro Yanagimoto, Yusuke Shiozawa, Tohru Nanmoku, Kaishi Satomi, Hideharu Muto, Naoshi Obara and 15 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 1 country.

Rie Nakamoto-MatsubaraDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Mamiko Sakata-YanagimotoDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan.
Terukazu EnamiDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Kenichi YoshidaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan.
Shintaro YanagimotoDivision for Health Service Promotion, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Yusuke ShiozawaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan.
Tohru NanmokuDepartment of Clinical Laboratory, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan.
Kaishi SatomiDepartment of Pathology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan.
Hideharu MutoDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan.
Naoshi ObaraDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan.
Takayasu KatoDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan; Life Science Center, Tsukuba Advanced Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Naoki KuritaDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan.
Yasuhisa YokoyamaDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan.
Koji IzutsuDepartment of Hematology, Toranomon Hospital, Minato-ku, Tokyo, Japan; Okinaka Memorial Institute for Medical Research, Minato-ku, Tokyo, Japan.
Yasunori OtaDepartment of Pathology, Toranomon Hospital, Minato-ku, Tokyo, Japan.
Masashi SanadaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan.
Seiichi ShimizuDepartment of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan; Department of Hematology, Tsuchiura Kyodo General Hospital, Tsuchiura, Ibaraki, Japan.
Takuya KomenoDepartment of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan; Department of Hematology, Mito Medical Center, National Hospital Organization, Ibaraki-machi, Ibaraki, Japan.
Yuji SatoDepartment of Hematology, Tsukuba Memorial Hospital, Tsukuba, Ibaraki, Japan.
Takayoshi ItoDepartment of Hematology, JA Toride Medical Center, Toride, Ibaraki, Japan.
Issay KitabayashiDivision of Hematological Malignancy, National Cancer Center Research Institute, Chuo-ku, Tokyo, Japan.
Kengo TakeuchiPathology Project for Molecular Targets, The Cancer Institute, Japanese Foundation for Cancer Research, Koto-ku, Tokyo, Japan.
Naoya NakamuraDepartment of Pathology, Tokai University School of Medicine, Isehara, Kanagawa, Japan.
Seishi OgawaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Japan.
Shigeru ChibaDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan; Department of Hematology, University of Tsukuba Hospital, Tsukuba, Ibaraki, Japan; Life Science Center, Tsukuba Advanced Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan.
University of Tsukuba · JPKyoto University · JPUniversity of Tsukuba Hospital · JPToranomon Hospital · JPJapanese Foundation For Cancer Research · JPJA Toride Medical Center · JPNational Hospital Organization Mito Medical Center · JPThe University of Tokyo · JPTokai University · JPTsuchiura Kyodo General Hospital · JPTsukuba Memorial Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Angioimmunoblastic T-cell lymphoma (AITL) and peripheral T-cell lymphoma, not otherwise specified (PTCL-NOS) are subtypes of T-cell lymphoma. Due to low tumor cell content and substantial reactive cell infiltration, these lymphomas are sometimes mistaken for other types of lymphomas or even non-neoplastic diseases. In addition, a significant proportion of PTCL-NOS cases reportedly exhibit features of AITL (AITL-like PTCL-NOS). Thus disagreement is common in distinguishing between AITL and PTCL-NOS. Using whole-exome and subsequent targeted sequencing, we recently identified G17V RHOA mutations in 60-70% of AITL and AITL-like PTCL-NOS cases but not in other hematologic cancers, including other T-cell malignancies. Here, we establish a sensitive detection method for the G17V RHOA mutation using a quantitative allele-specific polymerase chain reaction (qAS-PCR) assay. Mutated allele frequencies deduced from this approach were highly correlated with those determined by deep sequencing. This method could serve as a novel diagnostic tool for 60-70% of AITL and AITL-like PTCL-NOS.

Indexed as

Mutation, MissenseAllelesDNA Mutational AnalysisExomeHigh-Throughput Nucleotide SequencingHumansLymphoma, T-CellPolymerase Chain ReactionrhoA GTP-Binding ProteinrhoA GTP-Binding ProteinRHOA protein, human

Identifiers

PMID25310466
PMCPMC4195681
OpenAlexW2054994176

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.