Evidence map›Paper›PMID 25308864›Full record

ArticleStructure (London, England : 1993)2014

Structure and DNA-binding traits of the transition state regulator AbrB.

Andrew L Olson, Ashley T Tucker, Benjamin G Bobay, Erik J Soderblom, M Arthur Moseley, Richele J Thompson, John Cavanagh

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Anaerobic benzene oxidation inApplied and environmental microbiology · 2024
    Article
  3. The alternative sigma factor SigN ofJournal of bacteriology · 2023
    Article
  4. Expression of the Cyanobacterial FMicrobiology spectrum · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Andrew L OlsonDepartment of Molecular and Structural Biochemistry, North Carolina State University, 128 Polk Hall, Raleigh, NC 27659, USA.
Ashley T TuckerDepartment of Molecular and Structural Biochemistry, North Carolina State University, 128 Polk Hall, Raleigh, NC 27659, USA.
Benjamin G BobayDepartment of Molecular and Structural Biochemistry, North Carolina State University, 128 Polk Hall, Raleigh, NC 27659, USA.
Erik J SoderblomDuke Proteomics Core Facility, Institute for Genome Sciences and Policy, School of Medicine, B02 Levine Sciences Research Center, 450 Research Drive, Duke University, Durham, NC 27710, USA.
M Arthur MoseleyDuke Proteomics Core Facility, Institute for Genome Sciences and Policy, School of Medicine, B02 Levine Sciences Research Center, 450 Research Drive, Duke University, Durham, NC 27710, USA.
Richele J ThompsonDepartment of Molecular and Structural Biochemistry, North Carolina State University, 128 Polk Hall, Raleigh, NC 27659, USA.
John CavanaghDepartment of Molecular and Structural Biochemistry, North Carolina State University, 128 Polk Hall, Raleigh, NC 27659, USA. Electronic address: jcavana@ncsu.edu.
North Carolina State University · USDuke University · US

Funding

NMR STUDIES OF BACTERIAL REGULATORY PROTEINSR01GM055769 · NIGMS · WADSWORTH CENTER · PI CAVANAGH, JOHN, MELANDER, CHRISTIAN COREY · 1998 to 2017
$3.8M
NIGMS NIH HHS R01 GM055769NIGMS NIH HHS R01 GM55769
6 · The paper itself

Abstract

The AbrB protein from Bacillus subtilis is a DNA-binding global regulator controlling the onset of a vast array of protective functions under stressful conditions. Such functions include biofilm formation, antibiotic production, competence development, extracellular enzyme production, motility, and sporulation. AbrB orthologs are known in a variety of prokaryotic organisms, most notably in all infectious strains of Clostridia, Listeria, and Bacilli. Despite its central role in bacterial response and defense, its structure has been elusive because of its highly dynamic character. Orienting its N- and C-terminal domains with respect to one another has been especially problematic. Here, we have generated a structure of full-length, tetrameric AbrB using nuclear magnetic resonance, chemical crosslinking, and mass spectrometry. We note that AbrB possesses a strip of positive electrostatic potential encompassing its DNA-binding region and that its C-terminal domain aids in DNA binding.

Indexed as

Bacillus subtilisBacterial ProteinsBinding SitesDNA, BacterialDNA-Binding ProteinsMagnetic Resonance SpectroscopyMass SpectrometryMolecular Docking SimulationProtein MultimerizationProtein Structure, SecondaryTranscription FactorsAbrB protein, Bacillus subtilisBacterial ProteinsDNA, BacterialDNA-Binding ProteinsTranscription Factors

Identifiers

PMID25308864
PMCPMC4252516
OpenAlexW2023271580

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.