Evidence map›Paper›PMID 25308334›Full record

ArticleImmunity2014

Autophagy gene Atg16L1 prevents lethal T cell alloreactivity mediated by dendritic cells.

Vanessa M Hubbard-Lucey, Yusuke Shono, Katie Maurer, Mallory L West, Natalie V Singer, Carly G K Ziegler, Cecilia Lezcano, Ana Carolina Fragoso Motta, Karin Schmid, Samuel M Levi and 9 more

Abstract read
In one paragraph

Article in Immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Autophagy and Its Lineage-Specific Roles in the Hematopoietic System.Oxidative medicine and cellular longevity · 2023
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Vanessa M Hubbard-LuceyKimmel Center for Biology and Medicine at the Skirball Institute, New York, NY 10016, USA; Department of Microbiology, New York University School of Medicine, New York, NY 10016, USA.
Yusuke ShonoDepartment of Immunology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Katie MaurerKimmel Center for Biology and Medicine at the Skirball Institute, New York, NY 10016, USA; Sackler Institute of Graduate Biomedical Sciences, New York University School of Medicine, New York, NY 10016, USA.
Mallory L WestDepartment of Immunology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Natalie V SingerDepartment of Immunology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Carly G K ZieglerDepartment of Computational Biology and Immunology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Cecilia LezcanoProgram in Dermatopathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Ana Carolina Fragoso MottaProgram in Dermatopathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Karin SchmidDepartment of Haematology and Oncology, University Medical Centre University of Regensburg, Regensburg, 93053, Germany.
Samuel M LeviDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA.
George F MurphyProgram in Dermatopathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Chen LiuDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL 32611, USA.
Jeffrey D WinklerDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, USA; Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA 19104, USA.
Ravi K AmaravadiAbramson Cancer Center, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Gerhard RoglerDepartment of Gastroenterology, University Hospital Zürich, Rämistrasse 100, 8006 Zurich, Switzerland.
Anne M DickinsonHaematological Sciences, Institute of Cellular Medicine, Newcastle University, NE2 4HH Tyne and Wear, UK.
Ernst HollerDepartment of Haematology and Oncology, University Medical Centre University of Regensburg, Regensburg, 93053, Germany.
Marcel R M van den BrinkDepartment of Immunology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address: vandenbm@mskcc.org.
Ken CadwellKimmel Center for Biology and Medicine at the Skirball Institute, New York, NY 10016, USA; Department of Microbiology, New York University School of Medicine, New York, NY 10016, USA. Electronic address: ken.cadwell@med.nyu.edu.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
T LYMPHOCYTE SUBSET FUNCTION POST-TRANSPLANTATIONP01CA023766 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PERALES, MIGUEL-ANGEL · 1985 to 2023
$59.0M
Targeting the MAP and PI3 Kinase Pathways in MelanomaP01CA114046 · NCI · WISTAR INSTITUTE · PI MURPHY, MAUREEN E. · 2008 to 2023
$37.1M
MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
TREATMENT OF CANCER PATIENTS WITH THYMIC FACTORSP01CA033049 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SCHEINBERG, DAVID A · 1985 to 2009
$19.8M
TRAINING PROGRAM: MECHANISMS OF VIRUS-HOST INTERACTIONST32AI007647 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI Domenico Tortorella · 2000 to 2026
$11.5M
Diabetes, Digestive, and Kidney Diseases Extramural ResearchR01DK093668 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2011 to 2026
$7.3M
Strategies to enhance immune reconstitution after bone marrow transplantR01HL069929 · NHLBI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI VAN DEN BRINK, MARCEL R M · 2002 to 2015
$7.0M
Training Program in Immunology and Inflammation.T32AI100853 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Susan Ruth Schwab · 2012 to 2026
$4.5M
Strategies to Enhance Lymphoid Recovery After Radiation-Induced InjuryR01AI080455 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2008 to 2012
$2.6M
IL-22 in Thymic RegenerationR01AI101406 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2012 to 2016
$2.5M
NCI NIH HHS 5P30CA016087-33NCI NIH HHS P01 CA023766NCI NIH HHS P01 CA033049NCI NIH HHS P01 CA114046NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016087NCRR NIH HHS RR023704-01A1NCRR NIH HHS S10 RR023704NHLBI NIH HHS F32 HL115974NHLBI NIH HHS R01 HL069929NIAID NIH HHS AI100288NIAID NIH HHS R01 AI080455NIAID NIH HHS R01 AI100288NIAID NIH HHS R01 AI101406NIAID NIH HHS T32 AI007647NIAID NIH HHS T32 AI100853NIDDK NIH HHS F30 DK098925NIDDK NIH HHS R01 DK093668NIGMS NIH HHS T32 GM007308NIGMS NIH HHS T32 GM0738
6 · The paper itself

Abstract

Atg16L1 mediates the cellular degradative process of autophagy and is considered a critical regulator of inflammation based on its genetic association with inflammatory bowel disease. Here we find that Atg16L1 deficiency leads to an exacerbated graft-versus-host disease (GVHD) in a mouse model of allogeneic hematopoietic stem cell transplantation (allo-HSCT). Atg16L1-deficient allo-HSCT recipients with GVHD displayed increased T cell proliferation due to increased dendritic cell (DC) numbers and costimulatory molecule expression. Reduced autophagy within DCs was associated with lysosomal abnormalities and decreased amounts of A20, a negative regulator of DC activation. These results broaden the function of Atg16L1 and the autophagy pathway to include a role in limiting a DC-mediated response during inflammatory disease, such as GVHD.

Indexed as

AnimalsAutophagyAutophagy-Related ProteinsB7-1 AntigenB7-2 AntigenCarrier ProteinsCD40 AntigensCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell ProliferationCells, CulturedColitisCysteine EndopeptidasesDendritic CellsDisease Models, AnimalFemaleAtg16l1 protein, mouseAutophagy-Related ProteinsB7-1 AntigenB7-2 AntigenCarrier ProteinsCD40 AntigensCd86 protein, mouseCysteine EndopeptidasesGranulocyte-Macrophage Colony-Stimulating FactorHomeodomain ProteinsImmediate-Early ProteinsIntracellular Signaling Peptides and ProteinsLaptm5 protein, mouseMembrane ProteinsRAG-1 proteinReceptors, Antigen, T-Cell, gamma-deltaTnfaip3 protein, mouseTumor Necrosis Factor alpha-Induced Protein 3

Identifiers

PMID25308334
PMCPMC4237219

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.