Evidence map›Paper›PMID 25307738›Full record

ArticleThe British journal of dermatology2015

Genetic factors associated with naevus count and dermoscopic patterns: preliminary results from the Study of Nevi in Children (SONIC).

I Orlow, J M Satagopan, M Berwick, H L Enriquez, K A M White, K Cheung, S W Dusza, S A Oliveria, M A Marchetti, A Scope and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The British journal of dermatology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Dermoscopic features associated with 3-GEP PLA: LINC00518, PRAME, and TERT expression in suspicious pigmented lesions.Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Biologically distinct subsets of nevi.Giornale italiano di dermatologia e venereologia : organo ufficiale, Societa italiana di dermatologia e sifilografia · 2016
    Review
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

I OrlowDepartment of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY, 10065, U.S.A.
J M Satagopan
M Berwick
H L Enriquez
K A M White
K Cheung
S W Dusza
S A Oliveria
M A Marchetti
A Scope
A A Marghoob
A C Halpern
Memorial Sloan Kettering Cancer Center · USUniversity of New Mexico · USSheba Medical Center · IL

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Clinical and Translational Science CenterUL1TR000457 · NCATS · WEILL MEDICAL COLL OF CORNELL UNIV · PI IMPERATO-MCGINLEY, JULIANNE L · 2012 to 2016
$46.0M
THE FRAMINGHAM SCHOOL STUDY OF NEVI IN CHILDREN SONIC IIR01AR049342 · NIAMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI HALPERN, ALLAN C · 2003 to 2013
$6.6M
STUDY OF EXPOSURES, BEHAVIORS, AND BIOMARKERS IN CANCER EPIDEMIOLOGYR01CA137420 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SATAGOPAN, JAYA M · 2009 to 2012
$1.6M
THE FRAMINGHAM SCHOOL STUDY OF NEVI IN CHILDREN: SONIC IIR56AR049342 · NIAMS · SLOAN-KETTERING INST CAN RESEARCH · PI HALPERN, ALLAN C · 2008 to 2008
$477k
NCATS NIH HHS UL1 TR000457NCATS NIH HHS UL1TR000457NCI NIH HHS P30 CA008748NCI NIH HHS P30-CA008748NCI NIH HHS R01-CA137420NIAMS NIH HHS AR049342NIAMS NIH HHS R01 AR049342
6 · The paper itself

Abstract

backgroundMelanocytic naevi are an important risk factor for melanoma. Naevi with distinct dermoscopic patterns can differ in size, distribution and host pigmentation characteristics.

objectivesWe examined MC1R and 85 other candidate loci in a cohort of children to test the hypothesis that the development and dermoscopic type of naevi are modulated by genetic variants.

methodsBuccal DNAs were obtained from a cohort of 353 fifth graders (mean age 10·4 years). Polymorphisms were chosen based on a known or anticipated role in naevi and melanoma. Associations between single-nucleotide polymorphisms (SNPs) and baseline naevus count were determined by multivariate regression adjusting for sex, race/ethnicity and sun sensitivity. Dermoscopic images were available for 853 naevi from 290 children. Associations between SNPs and dermoscopic patterns were determined by polytomous regression.

resultsFour SNPs were significantly associated with increasing (IRF4) or decreasing (PARP1, CDK6 and PLA2G6) naevus count in multivariate shrinkage analyses with all SNPs included in the model; IRF4 rs12203952 showed the strongest association with log naevus count (relative risk 1·56, P < 0·001). Using homogeneous naevi as the reference, IRF4 rs12203952 and four other SNPs in TERT, CDKN1B, MTAP and PARP1 were associated with either globular or reticular dermoscopic patterns (P < 0·05).

conclusionsOur results provide evidence that subsets of naevi defined by dermoscopic patterns differ in their associations with germline genotypes and support the hypothesis that dermoscopically defined subsets of naevi are biologically distinct. These results require confirmation in larger cohorts. If confirmed, these findings will improve the current knowledge of naevogenesis and assist in the identification of individuals with high-risk phenotypes.

Indexed as

AllelesChildCyclin-Dependent Kinase 6DermoscopyFemaleGenetic LociGenotypeGroup VI Phospholipases A2HumansInterferon Regulatory Factor-4Interferon Regulatory FactorsMaleNevus, PigmentedPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesPolymorphism, Single NucleotideCDK6 protein, humanCyclin-Dependent Kinase 6Group VI Phospholipases A2Interferon Regulatory Factor-4Interferon Regulatory FactorsPARP1 protein, humanPLA2G6 protein, humanPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesReceptor, Melanocortin, Type 1

Identifiers

PMID25307738
PMCPMC4382400
OpenAlexW2088260402

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.