ArticleMolecular genetics and genomics : MGG2015
De novo transcriptome characterization of Lilium 'Sorbonne' and key enzymes related to the flavonoid biosynthesis.
Article in Molecular genetics and genomics : MGG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Phylogenomic and comparative analyses of plastomes of the tribe Marsdenieae (Apocynaceae: Asclepiadoideae): insights into plastome characteristics and generic relationships with an emphasis on Asian genera.BMC plant biology · 2026Article
- Full-Length Transcriptome Characterization and Functional Analysis of Pathogenesis-Related Proteins inInternational journal of molecular sciences · 2022Article
- Ethylene Response Factor LlERF110 Mediates Heat Stress Response via Regulation ofInternational journal of molecular sciences · 2022Article
- Comparative transcriptome and metabolome analyses identified the mode of sucrose degradation as a metabolic marker for early vegetative propagation in bulbs of Lycoris.The Plant journal : for cell and molecular biology · 2022Article
- The Heat Stress Transcription Factor LlHsfA4 Enhanced Basic Thermotolerance through Regulating ROS Metabolism in Lilies (International journal of molecular sciences · 2022Article
- Metabolic and Transcriptomic Profiling ofFrontiers in plant science · 2021Article
- Change in Sucrose Cleavage Pattern and Rapid Starch Accumulation Govern Lily Shoot-to-Bulblet TransitionFrontiers in plant science · 2020Article
- Integrating Transcriptomic and GC-MS Metabolomic Analysis to Characterize Color and Aroma Formation during Tepal Development inPlants (Basel, Switzerland) · 2019Article
- Transcriptome changes in the phenylpropanoid pathway in senescing leaves ofActa physiologiae plantarum · 2019Article
- Transcriptome Sequencing Analysis Provides Insights Into the Response toEvolutionary bioinformatics online · 2019Article
- De Novo Transcriptome Sequencing of the Deep-Sea-Derived FungusInternational journal of molecular sciences · 2018Article
- Two-dimensional analysis provides molecular insight into flower scent of Lilium 'Siberia'.Scientific reports · 2018Article
- Construction of a high-density genetic map: genotyping by sequencing (GBS) to map purple seed coat color (Hereditas · 2018Article
- Identification of differentially expressed genes in flower, leaf and bulb scale of Lilium oriental hybrid 'Sorbonne' and putative control network for scent genes.BMC genomics · 2017Article
- De Novo Transcriptome Analysis of Plant Pathogenic Fungus Myrothecium roridum and Identification of Genes Associated with Trichothecene Mycotoxin Biosynthesis.International journal of molecular sciences · 2017Article
- Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development inFrontiers in plant science · 2017Article
- RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.).BMC genomics · 2016Article
- De novo assembly and characterization of the Welsh onion (Allium fistulosum L.) transcriptome using Illumina technology.Molecular genetics and genomics : MGG · 2016Article
- De novo assembly and characterization of the leaf, bud, and fruit transcriptome from the vulnerable tree Juglans mandshurica for the development of 20 new microsatellite markers using Illumina sequencing.Molecular genetics and genomics : MGG · 2016Article
- Large-scale developing of simple sequence repeat markers and probing its correlation with ramie (Boehmeria nivea L.) fiber quality.Molecular genetics and genomics : MGG · 2016Article
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Authors and funding
4 authors.
Funding
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Abstract
Lily is an important cut-flower and bulb crop in the commercial market. Here, transcriptome profiling of Lilium 'Sorbonne' was conducted through de novo sequencing based on Illumina platform. This research aims at revealing basic information and data that can be used for applied purposes especially the molecular regulatory information on flower color formation in lily. In total, 36,920,680 short reads which corresponded to 3.32 GB of total nucleotides, were produced through transcriptome sequencing. These reads were assembled into 39,636 Unigenes, of which 30,986 were annotated in Nr, Nt, Swiss-Prot, KEGG, COG, GO databases. Based on the three public protein databases, a total of 32,601 coding sequences were obtained. Meanwhile, 19,242 Unigenes were assigned to 128 KEGG pathways. Those with the greatest representation by unique sequences were for ''metabolic pathways'' (5,406 counts, 28.09 %). Our transcriptome revealed 156 Unigenes that encode key enzymes in the flavonoid biosynthesis pathway including CHS, CHI, F3H, FLS, DFR, etc. MISA software identified 2,762 simple sequence repeats, from which 1,975 primers pairs were designed. Over 2,762 motifs were identified, of which the most frequent was AG/CT (659, 23.86 %), followed by A/T (615, 22.27 %) and CCG/CGG (416, 15.06 %). Based on the results, we believe that the color formation of the Lilium 'Sorbonne' flower was mainly controlled by the flavonoid biosynthesis pathway. Additionally, this research provides initial genetic resources that will be valuable to the lily community for other molecular biology research, and the SSRs will facilitate marker-assisted selection in lily breeding.
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