Evidence map›Paper›PMID 25306919›Full record

ArticleMolecular cell2014

Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome.

Yury S Polikanov, Ilya A Osterman, Teresa Szal, Vadim N Tashlitsky, Marina V Serebryakova, Pavel Kusochek, David Bulkley, Irina A Malanicheva, Tatyana A Efimenko, Olga V Efremenkova and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
  2. Structural basis for emetine inhibition of ribosome translocation inbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Review
  5. Amicoumacins produced by the native citrus microbiome isolateApplied and environmental microbiology · 2025
    Article
  6. Article
  7. The Interplay Between theInternational journal of molecular sciences · 2024
    Review
  8. Article
  9. Paenilamicins from the honey bee pathogenbioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Antibiotics (Basel, Switzerland) · 2023
    Article
  16. Review
  17. Review
  18. Review
  19. Deep Functional Profiling of Wild Animal Microbiomes Reveals ProbioticInternational journal of molecular sciences · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 3 countries.

Yury S PolikanovDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Yale University, New Haven, CT 06520, USA.
Ilya A OstermanLomonosov Moscow State University, Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology, 119992 Moscow, Russia.
Teresa SzalCenter for Pharmaceutical Biotechnology, University of Illinois at Chicago, Chicago, IL 60607, USA.
Vadim N TashlitskyLomonosov Moscow State University, Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology, 119992 Moscow, Russia.
Marina V SerebryakovaLomonosov Moscow State University, Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology, 119992 Moscow, Russia.
Pavel KusochekLomonosov Moscow State University, Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology, 119992 Moscow, Russia.
David BulkleyDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.
Irina A MalanichevaG.F. Gause Institute of New Antibiotics, Russian Academy of Medical Sciences, 119867 Moscow, Russia.
Tatyana A EfimenkoG.F. Gause Institute of New Antibiotics, Russian Academy of Medical Sciences, 119867 Moscow, Russia.
Olga V EfremenkovaG.F. Gause Institute of New Antibiotics, Russian Academy of Medical Sciences, 119867 Moscow, Russia.
Andrey L KonevegaB.P. Konstantinov Petersburg Nuclear Physics Institute, 188300 Gatchina, Russia; Saint Petersburg State Polytechnical University, Polytechnicheskaya 29, 195251 Saint Petersburg, Russia.
Karen J ShawHearts Consulting Group, San Diego, CA 92127, USA.
Alexey A BogdanovLomonosov Moscow State University, Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology, 119992 Moscow, Russia.
Marina V RodninaMax Planck Institute for Biophysical Chemistry, 37077 Gottingen, Germany.
Olga A DontsovaLomonosov Moscow State University, Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology, 119992 Moscow, Russia.
Alexander S MankinCenter for Pharmaceutical Biotechnology, University of Illinois at Chicago, Chicago, IL 60607, USA. Electronic address: shura@uic.edu.
Thomas A SteitzDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Yale University, New Haven, CT 06520, USA. Electronic address: thomas.steitz@yale.edu.
Petr V SergievLomonosov Moscow State University, Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology, 119992 Moscow, Russia. Electronic address: petya@genebee.msu.ru.
Lomonosov Moscow State University · RUGause Institute of New Antibiotics Russian Academy of Medical Sciences · RUYale University · USUniversity of Illinois Chicago · USAcademy of Management · USMax Planck Institute for Biophysical Chemistry · DEPeter the Great St. Petersburg Polytechnic University · RU

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
Molecular mechanisms of action of macrolide antibioticsR01GM106386 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, VAZQUEZ-LASLOP, NORA · 2013 to 2016
$1.2M
Programmed translation arrest controlled by nascent peptides and antibioticsR01GM104370 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, VAZQUEZ-LASLOP, NORA · 2012 to 2015
$1.2M
Howard Hughes Medical InstituteNIGMS NIH HHS GM022778NIGMS NIH HHS GM106386NIGMS NIH HHS P01 GM022778NIGMS NIH HHS R01 GM104370NIGMS NIH HHS R01 GM106386
6 · The paper itself

Abstract

We demonstrate that the antibiotic amicoumacin A (AMI) is a potent inhibitor of protein synthesis. Resistance mutations in helix 24 of the 16S rRNA mapped the AMI binding site to the small ribosomal subunit. The crystal structure of bacterial ribosome in complex with AMI solved at 2.4 Å resolution revealed that the antibiotic makes contacts with universally conserved nucleotides of 16S rRNA in the E site and the mRNA backbone. Simultaneous interactions of AMI with 16S rRNA and mRNA and the in vivo experimental evidence suggest that it may inhibit the progression of the ribosome along mRNA. Consistent with this proposal, binding of AMI interferes with translocation in vitro. The inhibitory action of AMI can be partly compensated by mutations in the translation elongation factor G.

Indexed as

RNA StabilityAnti-Bacterial AgentsBacterial ProteinsBase SequenceBinding SitesCoumarinsCrystallography, X-RayDrug Resistance, BacterialEscherichia coliMicrobial Sensitivity TestsModels, MolecularPeptide Elongation Factor GProtein BiosynthesisProtein Synthesis InhibitorsRibosome Subunits, Large, BacterialRibosome Subunits, Small, Bacterialamicoumacin AAnti-Bacterial AgentsBacterial ProteinsCoumarinsPeptide Elongation Factor GProtein Synthesis InhibitorsRNA, Messenger

Identifiers

PMID25306919
PMCPMC4253140
OpenAlexW2097857247

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.