Evidence map›Paper›PMID 25306544›Full record

ArticleNature methods2014

An improved surface passivation method for single-molecule studies.

Boyang Hua, Kyu Young Han, Ruobo Zhou, Hajin Kim, Xinghua Shi, Sanjaya C Abeysirigunawardena, Ankur Jain, Digvijay Singh, Vasudha Aggarwal, Sarah A Woodson and 1 more

Abstract read
In one paragraph

Article in Nature methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The Fantastic Single-Molecule Techniques.Chemical & biomedical imaging · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. DNA Hanger: Surface-Minimized Single-Molecule Immunoassay Platform.Small (Weinheim an der Bergstrasse, Germany) · 2025
    Article
  11. Competition for Hfq drives kinetic selection of mRNA targets byProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Reusable Microfluidic Chambers for Single-Molecule Microscopy.ACS applied materials & interfaces · 2024
    Article
  18. Article
  19. Review
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Boyang HuaCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.ORCID 0000000288699762
Kyu Young Han1] Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. [2] Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. [3] Howard Hughes Medical Institute, Urbana, Illinois, USA.
Ruobo Zhou1] Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. [2] Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Hajin Kim1] School of Life Sciences, Ulsan National Institute of Science and Technology, Ulsan, Republic of Korea. [2] Center for Soft and Living Matter, Institute for Basic Science, Ulsan, Republic of Korea.
Xinghua Shi1] Howard Hughes Medical Institute, Urbana, Illinois, USA. [2] Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Sanjaya C AbeysirigunawardenaT.C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, USA.
Ankur JainCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Digvijay SinghCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Vasudha AggarwalCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Sarah A Woodson1] T.C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, USA. [2] Program in Cell, Molecular, Developmental Biology, and Biophysics (CMDB), Johns Hopkins University, Baltimore, Maryland, USA.ORCID 0000000301701987
Taekjip Ha1] Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. [2] Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. [3] Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. [4] Howard Hughes Medical Institute, Urbana, Illinois, USA. [5] Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.ORCID 0000000321956258

Funding

TIME RESOLVED HYDROXYL RADICAL FOOTPRINTING OF RNAR01GM060819 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WOODSON, SARAH A. · 1999 to 2019
$6.1M
Single Molecule Study of Helicase MechanismsR01GM065367 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HA, TAEKJIP · 2002 to 2014
$3.6M
Single-Molecule Dissection of mTOR ComplexesR21AG042332 · NIA · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI CHEN, JIE, HA, TAEKJIP · 2013 to 2014
$361k
Howard Hughes Medical InstituteNIA NIH HHS AG042332NIA NIH HHS R21 AG042332NIGMS NIH HHS GM065367NIGMS NIH HHS GM60819NIGMS NIH HHS R01 GM060819NIGMS NIH HHS R01 GM065367
6 · The paper itself

Abstract

We report a surface passivation method based on dichlorodimethylsilane (DDS)-Tween-20 for in vitro single-molecule studies, which, under the conditions tested here, more efficiently prevented nonspecific binding of biomolecules than the standard poly(ethylene glycol) surface. The DDS-Tween-20 surface was simple and inexpensive to prepare and did not perturb the behavior and activities of tethered biomolecules. It can also be used for single-molecule imaging in the presence of high concentrations of labeled species in solution.

Indexed as

DNA-Directed DNA PolymeraseFluorescence Resonance Energy TransferHumansPolyethylene GlycolsPolysorbatesProliferating Cell Nuclear AntigenSilanesSurface PropertiesY-Family DNA PolymerasesdichlorodimethylsilaneDNA-Directed DNA PolymerasePOLK protein, humanPolyethylene GlycolsPolysorbatesProliferating Cell Nuclear AntigenSilanesY-Family DNA Polymerases

Identifiers

PMID25306544
PMCPMC4245390

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.