Evidence map›Paper›PMID 25306253›Full record

ArticleMolecular cell2014

Drug sensing by the ribosome induces translational arrest via active site perturbation.

Stefan Arenz, Sezen Meydan, Agata L Starosta, Otto Berninghausen, Roland Beckmann, Nora Vázquez-Laslop, Daniel N Wilson

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
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  9. Paenilamicins from the honey bee pathogenbioRxiv : the preprint server for biology · 2024
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  11. Practical Synthesis ofACS chemical biology · 2023
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  18. Putting the antibiotics chloramphenicol and linezolid into context.Nature structural & molecular biology · 2022
    Article
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Stefan ArenzGene Center and Department for Biochemistry, University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany.
Sezen MeydanCenter for Pharmaceutical Biotechnology, University of Illinois, Chicago, Chicago, IL 60607, USA.
Agata L StarostaGene Center and Department for Biochemistry, University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany.
Otto BerninghausenGene Center and Department for Biochemistry, University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany.
Roland BeckmannGene Center and Department for Biochemistry, University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany; Center for integrated Protein Science Munich (CiPSM), University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany.
Nora Vázquez-LaslopCenter for Pharmaceutical Biotechnology, University of Illinois, Chicago, Chicago, IL 60607, USA.
Daniel N WilsonGene Center and Department for Biochemistry, University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany; Center for integrated Protein Science Munich (CiPSM), University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany. Electronic address: wilson@lmb.uni-muenchen.de.
University of Illinois Chicago · USCenter for Integrated Protein Science Munich · DE

Funding

Molecular mechanisms of action of macrolide antibioticsR01GM106386 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, VAZQUEZ-LASLOP, NORA · 2013 to 2016
$1.2M
Programmed translation arrest controlled by nascent peptides and antibioticsR01GM104370 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, VAZQUEZ-LASLOP, NORA · 2012 to 2015
$1.2M
Hygromycin A: Activity, Biosynthesis, Export, Resistance and RegulationR01GM095737 · NIGMS · PORTLAND STATE UNIVERSITY · PI REYNOLDS, KEVIN A · 2011 to 2014
$1.2M
NIGMS NIH HHS GM106386NIGMS NIH HHS R01 GM095737NIGMS NIH HHS R01GM095737NIGMS NIH HHS R01 GM104370NIGMS NIH HHS R01 GM106386
6 · The paper itself

Abstract

During protein synthesis, nascent polypeptide chains within the ribosomal tunnel can act in cis to induce ribosome stalling and regulate expression of downstream genes. The Staphylococcus aureus ErmCL leader peptide induces stalling in the presence of clinically important macrolide antibiotics, such as erythromycin, leading to the induction of the downstream macrolide resistance methyltransferase ErmC. Here, we present a cryo-electron microscopy (EM) structure of the erythromycin-dependent ErmCL-stalled ribosome at 3.9 Å resolution. The structure reveals how the ErmCL nascent chain directly senses the presence of the tunnel-bound drug and thereby induces allosteric conformational rearrangements at the peptidyltransferase center (PTC) of the ribosome. ErmCL-induced perturbations of the PTC prevent stable binding and accommodation of the aminoacyl-tRNA at the A-site, leading to inhibition of peptide bond formation and translation arrest.

Indexed as

Protein BiosynthesisBacterial ProteinsCatalytic DomainCryoelectron MicroscopyErythromycinModels, MolecularPeptide FragmentsProtein BindingProtein Sorting SignalsProtein Structure, QuaternaryProtein Synthesis InhibitorsRibosomesBacterial ProteinsErythromycinPeptide FragmentsProtein Sorting SignalsProtein Synthesis Inhibitors

Identifiers

PMID25306253
PMCPMC4252717
OpenAlexW2131994638

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.