Evidence map›Paper›PMID 25305019›Full record

ArticleThe Journal of biological chemistry2014

The histone H2A deubiquitinase USP16 interacts with HERC2 and fine-tunes cellular response to DNA damage.

Zhuo Zhang, Huirong Yang, Hengbin Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
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  11. Review
  12. Article
  13. DNA Damage Response Regulation by Histone Ubiquitination.International journal of molecular sciences · 2022
    Review
  14. Review
  15. Article
  16. Article
  17. The Role of Polycomb Group Protein BMI1 in DNA Repair and Genomic Stability.International journal of molecular sciences · 2021
    Review
  18. Article
  19. Article
  20. CRISPR-Cas9 Editing of Human Histone Deubiquitinase GeneFrontiers in cell and developmental biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Zhuo ZhangFrom the Department of Biochemistry and Molecular Genetics, Stem Cell Institute, University of Alabama at Birmingham, Birmingham, Alabama 35294 and.
Huirong YangFrom the Department of Biochemistry and Molecular Genetics, Stem Cell Institute, University of Alabama at Birmingham, Birmingham, Alabama 35294 and Institutes of Biomedical Sciences, Fudan University, Shanghai 200433, China.
Hengbin WangFrom the Department of Biochemistry and Molecular Genetics, Stem Cell Institute, University of Alabama at Birmingham, Birmingham, Alabama 35294 and hbwang@uab.edu.
University of Alabama at Birmingham · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
Role of Ubp-M and H2A deubiquitination in chromatin and cellular functionR01GM081489 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WANG, HENGBIN · 2008 to 2012
$1.5M
NCI NIH HHS CA13148-39NCI NIH HHS P30 CA013148NIGMS NIH HHS GM081489NIGMS NIH HHS R01 GM081489
6 · The paper itself

Abstract

Histone ubiquitination at DNA double strand breaks facilitates the recruitment of downstream repair proteins; however, how the ubiquitination is dynamically regulated during repair and terminated after repair is not well understood. Here we report that the histone H2A deubiquitinase USP16 interacts with HERC2, fine-tunes the ubiquitin signal during repair, and importantly, is required for terminating the ubiquitination signal after repair. HERC2 interacts with the coiled-coil domain of USP16 through its C-terminal HECT domain. HERC2 knockdown affects the levels of ubiquitinated H2A through the action of USP16. In response to DNA damage, USP16 levels increase, and this increase is dependent on HERC2. Increased USP16 serves as a negative regulator for DNA damage-induced ubiquitin foci formation and affects downstream factor recruitment and DNA damage response. The functional significance of USP16 is further manifested in human Down syndrome patient cells, which contain three copies of USP16 genes and have altered cellular response to DNA damage. Finally, we demonstrated that USP16 could deubiquitinate both H2A Lys-119 and H2A Lys-15 ubiquitination in vitro. Therefore, this study identifies USP16 as a critical regulator of DNA damage response and H2A Lys-15 ubiquitination as a potential target of USP16.

Indexed as

DNA DamageBlotting, WesternCell Line, TumorDNA RepairGuanine Nucleotide Exchange FactorsHEK293 CellsHistonesHumansLysineMicroscopy, FluorescenceProtein BindingRNA InterferenceSignal TransductionUbiquitinUbiquitinationUbiquitin-Protein LigasesGuanine Nucleotide Exchange FactorsHERC2 protein, humanHistonesLysineUbiquitinUbiquitin-Protein LigasesUbiquitin-Specific ProteasesUbiquitin ThiolesteraseUSP16 protein, humanDeubiquitylation (Deubiquitination)DNA DamageHistoneUbiquitin LigaseUbiquitylation (Ubiquitination)

Identifiers

PMID25305019
PMCPMC4239636
OpenAlexW2074491062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.