Evidence map›Paper›PMID 25304509›Full record

ArticleApplied and environmental microbiology2015

Recovery of plasmid pEMB1, whose toxin-antitoxin system stabilizes an ampicillin resistance-conferring β-lactamase gene in Escherichia coli, from natural environments.

Hyo Jung Lee, Hyun Mi Jin, Moon Su Park, Woojun Park, Eugene L Madsen, Che Ok Jeon

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Novel insights into genetic characteristics ofFrontiers in microbiology · 2023
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  6. Physical and Functional Interplay between MazFApplied and environmental microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Hyo Jung LeeDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Hyun Mi JinDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Moon Su ParkDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Woojun ParkDivision of Environmental Science and Ecological Engineering, Korea University, Seoul, Republic of Korea.
Eugene L MadsenDepartment of Microbiology, Cornell University, Ithaca, New York, USA.
Che Ok JeonDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea cojeon@cau.ac.kr.
Chung-Ang University · KRCornell University · USKorea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non-culture-based procedures were used to investigate plasmids showing ampicillin resistance properties in two different environments: remote mountain soil (Mt. Jeombong) and sludge (Tancheon wastewater treatment plant). Total DNA extracted from the environmental samples was directly transformed into Escherichia coli TOP10, and a single and three different plasmids were obtained from the mountain soil and sludge samples, respectively. Interestingly, the restriction fragment length polymorphism pattern of the plasmid from the mountain soil sample, designated pEMB1, was identical to the pattern of one of the three plasmids from the sludge sample. Complete DNA sequencing of plasmid pEMB1 (8,744 bp) showed the presence of six open reading frames, including a β-lactamase gene. Using BLASTX, the orf5 and orf6 genes were suggested to encode a CopG family transcriptional regulator and a plasmid stabilization system, respectively. Functional characterization of these genes using a knockout orf5 plasmid (pEMB1ΔparD) and the cloning and expression of orf6 (pET21bparE) indicated that these genes were antitoxin (parD) and toxin (parE) genes. Plasmid stability tests using pEMB1 and pEMB1ΔparDE in E. coli revealed that the orf5 and orf6 genes enhanced plasmid maintenance in the absence of ampicillin. Using a PCR-based survey, pEMB1-like plasmids were additionally detected in samples from other human-impacted sites (sludge samples) and two other remote mountain soil samples, suggesting that plasmids harboring a β-lactamase gene with a ParD-ParE toxin-antitoxin system occurs broadly in the environment. This study extends knowledge about the dissemination and persistence of antibiotic resistance genes in naturally occurring microbial populations.

Indexed as

Ampicillin ResistanceGenomic InstabilityPlasmidsSoil MicrobiologyBacterial Toxinsbeta-LactamasesCloning, MolecularDNA, BacterialEscherichia coliGene Knockout TechniquesMolecular Sequence DataOpen Reading FramesPolymorphism, Restriction Fragment LengthSequence Analysis, DNASewageBacterial Toxinsbeta-LactamasesDNA, BacterialSewage

Identifiers

PMID25304509
PMCPMC4272753
OpenAlexW2132125992

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.