Evidence map›Paper›PMID 25303713›Full record

ArticleThe ISME journal2015

Filamentous phages prevalent in Pseudoalteromonas spp. confer properties advantageous to host survival in Arctic sea ice.

Zi-Chao Yu, Xiu-Lan Chen, Qing-Tao Shen, Dian-Li Zhao, Bai-Lu Tang, Hai-Nan Su, Zhao-Yu Wu, Qi-Long Qin, Bin-Bin Xie, Xi-Ying Zhang and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Article
  6. Article
  7. Article
  8. The role of rhizosphere phages in soil health.FEMS microbiology ecology · 2024
    Review
  9. Article
  10. Breaking the Ice: A Review of Phages in Polar Ecosystems.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Characterization of a Filamentous Phage, Vaf1, fromApplied and environmental microbiology · 2023
    Article
  15. Genomic diversity and ecological distribution of marineMarine life science & technology · 2023
    Article
  16. AInternational journal of molecular sciences · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Zi-Chao Yu1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China.
Xiu-Lan Chen1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China [3] Collaborative Innovation Center of Deep Sea Biology, Shandong University, Jinan, China.
Qing-Tao ShenMarine Biotechnology Research Center, Shandong University, Jinan, China.
Dian-Li Zhao1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China.
Bai-Lu Tang1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China.
Hai-Nan Su1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China [3] Collaborative Innovation Center of Deep Sea Biology, Shandong University, Jinan, China.
Zhao-Yu Wu1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China.
Qi-Long Qin1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China [3] Collaborative Innovation Center of Deep Sea Biology, Shandong University, Jinan, China.
Bin-Bin Xie1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China [3] Collaborative Innovation Center of Deep Sea Biology, Shandong University, Jinan, China.
Xi-Ying Zhang1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China [3] Collaborative Innovation Center of Deep Sea Biology, Shandong University, Jinan, China.
Yong YuSOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China.
Bai-Cheng ZhouMarine Biotechnology Research Center, Shandong University, Jinan, China.
Bo ChenSOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China.
Yu-Zhong Zhang1] State Key Laboratory of Microbial Technology, Shandong University, Jinan, China [2] Marine Biotechnology Research Center, Shandong University, Jinan, China [3] Collaborative Innovation Center of Deep Sea Biology, Shandong University, Jinan, China.
State Key Laboratory of Microbial TechnologyShandong University · CNPolar Research Institute of China · CNCollaborative Innovation Centre for Advanced Ship and Deep-Sea Exploration · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sea ice is one of the most frigid environments for marine microbes. In contrast to other ocean ecosystems, microbes in permanent sea ice are space confined and subject to many extreme conditions, which change on a seasonal basis. How these microbial communities are regulated to survive the extreme sea ice environment is largely unknown. Here, we show that filamentous phages regulate the host bacterial community to improve survival of the host in permanent Arctic sea ice. We isolated a filamentous phage, f327, from an Arctic sea ice Pseudoalteromonas strain, and we demonstrated that this type of phage is widely distributed in Arctic sea ice. Growth experiments and transcriptome analysis indicated that this phage decreases the host growth rate, cell density and tolerance to NaCl and H2O2, but enhances its motility and chemotaxis. Our results suggest that the presence of the filamentous phage may be beneficial for survival of the host community in sea ice in winter, which is characterized by polar night, nutrient deficiency and high salinity, and that the filamentous phage may help avoid over blooming of the host in sea ice in summer, which is characterized by polar day, rich nutrient availability, intense radiation and high concentration of H2O2. Thus, while they cannot kill the host cells by lysing them, filamentous phages confer properties advantageous to host survival in the Arctic sea ice environment. Our study provides a foremost insight into the ecological role of filamentous phages in the Arctic sea ice ecosystem.

Indexed as

Arctic RegionsBacteriophagesEcosystemHydrogen PeroxideIce CoverPseudoalteromonasSeasonsSeawaterSodium ChlorideHydrogen PeroxideSodium Chloride

Identifiers

PMID25303713
PMCPMC4817708
OpenAlexW2070857419

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.