Evidence map›Paper›PMID 25303020›Full record

ReviewBiochemistry2015

Circadian genomics reveal a role for post-transcriptional regulation in mammals.

Shihoko Kojima, Carla B Green

Abstract readReview
In one paragraph

Review in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Circadian clock and cancer.Military Medical Research · 2026
    Review
  4. Article
  5. Coordination of rhythmic RNA synthesis and degradation orchestrates 24- and 12-h RNA expression patterns in mouse fibroblasts.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Circadian Pattern of Ion Channel Gene Expression in Failing Human Hearts.Circulation. Arrhythmia and electrophysiology · 2021
    Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Circadian Posttranscriptional Regulatory Mechanisms in Mammals.Cold Spring Harbor perspectives in biology · 2018
    Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Shihoko KojimaDepartment of Neuroscience, University of Texas Southwestern Medical Center , Dallas, Texas 75390-9111, United States.
Carla B Green
The University of Texas Southwestern Medical Center · US

Funding

Transcriptional Architecture and Chromatin Landscape of Circadian Clocks in AgingR01AG045795 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI GREEN, CARLA B., TAKAHASHI, JOSEPH S · 2013 to 2017
$1.5M
Structure/Function Studies of Mammalian Circadian Clock ProteinsR01GM090247 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GREEN, CARLA B. · 2011 to 2014
$1.3M
Circadian regulation of mitochondrial RNA polyadenylationR01GM111387 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GREEN, CARLA B. · 2014 to 2017
$1.2M
Analysis of a new circadian mutantR21NS079986 · NINDS · UNIVERSITY OF VIRGINIA · PI GREEN, CARLA B., MENAKER, MICHAEL · 2012 to 2013
$436k
NIA NIH HHS R01 AG045795NIA NIH HHS R01AG045795NIGMS NIH HHS R01 GM090247NIGMS NIH HHS R01GM090247NIGMS NIH HHS R01 GM111387NINDS NIH HHS R21NS079986
6 · The paper itself

Abstract

To maintain daily cycles, the circadian clock must tightly regulate the rhythms of thousands of mRNAs and proteins with the correct period, phase, and amplitude to ultimately drive the wide range of rhythmic biological processes. Recent genomic approaches have revolutionized our view of circadian gene expression and highlighted the importance of post-transcriptional regulation in driving mRNA rhythmicity. Even after transcripts are made from DNA, subsequent processing and regulatory steps determine when, where, and how much protein will be generated. These post-transcriptional regulatory mechanisms can add flexibility to overall gene expression and alter protein levels rapidly without requiring transcript synthesis and are therefore beneficial for cells; however, the extent to which circadian post-transcriptional mechanisms contribute to rhythmic profiles throughout the genome and the mechanisms involved have not been fully elucidated. In this review, we will summarize how circadian genomics have revealed new insights into rhythmic post-transcriptional regulation in mammals and discuss potential implications of such regulation in controlling many circadian-driven physiologies.

Indexed as

Circadian ClocksRNA Processing, Post-TranscriptionalAnimalsCircadian RhythmCLOCK ProteinsGene Expression RegulationGenomicsHumansProteinsProteomicsRNA, MessengerCLOCK ProteinsProteinsRNA, Messenger

Identifiers

PMID25303020
PMCPMC4302021
OpenAlexW2045726065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.