Evidence map›Paper›PMID 25302809›Full record

ArticleSensors (Basel, Switzerland)2014

Ion-channel genosensor for the detection of specific DNA sequences derived from Plum Pox Virus in plant extracts.

Kamila Malecka, Lech Michalczuk, Hanna Radecka, Jerzy Radecki

Open access · goldAbstract read
In one paragraph

Article in Sensors (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Detection of the Plant PathogenSensors (Basel, Switzerland) · 2019
    Article
  6. Article
  7. Review
  8. DNA Sequencing Sensors: An Overview.Sensors (Basel, Switzerland) · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kamila MaleckaInstitute of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland. k.malecka@pan.olsztyn.pl.
Lech MichalczukResearch Institute of Horticulture, Konstytucji 3 Maja 1/3, 96-100 Skierniewice, Poland. lech.michalczuk@inhort.pl.
Hanna RadeckaInstitute of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland. h.radecka@pan.olsztyn.pl.
Jerzy RadeckiInstitute of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland. j.radecki@pan.olsztyn.pl.
InLife Institute of Animal Reproduction and Food Research, Polish Academy of Sciences · PLInstytut Ogrodnictwa – Państwowy Instytut Badawczy · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A DNA biosensor for detection of specific oligonucleotides sequences of Plum Pox Virus (PPV) in plant extracts and buffer is proposed. The working principles of a genosensor are based on the ion-channel mechanism. The NH2-ssDNA probe was deposited onto a glassy carbon electrode surface to form an amide bond between the carboxyl group of oxidized electrode surface and amino group from ssDNA probe. The analytical signals generated as a result of hybridization were registered in Osteryoung square wave voltammetry in the presence of [Fe(CN)6]3-/4- as a redox marker. The 22-mer and 42-mer complementary ssDNA sequences derived from PPV and DNA samples from plants infected with PPV were used as targets. Similar detection limits of 2.4 pM (31.0 pg/mL) and 2.3 pM (29.5 pg/mL) in the concentration range 1-8 pM were observed in the presence of the 22-mer ssDNA and 42-mer complementary ssDNA sequences of PPV, respectively. The genosensor was capable of discriminating between samples consisting of extracts from healthy plants and leaf extracts from infected plants in the concentration range 10-50 pg/mL. The detection limit was 12.8 pg/mL. The genosensor displayed good selectivity and sensitivity. The 20-mer partially complementary DNA sequences with four complementary bases and DNA samples from healthy plants used as negative controls generated low signal.

Indexed as

Biosensing TechniquesBase SequenceDNA, Single-StrandedDNA, ViralLimit of DetectionNucleic Acid HybridizationPlant ExtractsPlum Pox VirusDNA, Single-StrandedDNA, ViralPlant Extracts

Identifiers

PMID25302809
PMCPMC4239951
OpenAlexW1965820273

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.