Evidence map›Paper›PMID 25301986›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2007

Computer aided classification of cell nuclei in the gastrointestinal tract by volume and principal axis.

Ann M Sagstetter, Jon J Camp, Matthew S Lurken, Joseph H Szurszewski, Gianrico Farrugia, Simon J Gibbons, Richard A Robb

Abstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ann M SagstetterMayo Clinic/Foundation, 200 1st St. SW, Rochester, MN.
Jon J CampMayo Clinic/Foundation, 200 1st St. SW, Rochester, MN.
Matthew S LurkenMayo Clinic/Foundation, 200 1st St. SW, Rochester, MN.
Joseph H SzurszewskiMayo Clinic/Foundation, 200 1st St. SW, Rochester, MN.
Gianrico FarrugiaMayo Clinic/Foundation, 200 1st St. SW, Rochester, MN.
Simon J GibbonsMayo Clinic/Foundation, 200 1st St. SW, Rochester, MN.
Richard A RobbMayo Clinic/Foundation, 200 1st St. SW, Rochester, MN.
Mayo Clinic · US

Funding

Physiological Characterization and Data Integration CoreP01DK068055 · NIDDK · MAYO CLINIC ROCHESTER · PI FARRUGIA, GIANRICO · 2004 to 2019
$23.8M
CALCIUM DYNAMICS IN INTERSTITIAL CELLS OF CAJALR01DK057061 · NIDDK · MAYO CLINIC ROCHESTER · PI GIANRICO FARRUGIA, Tamas Ordog · 2000 to 2026
$8.2M
NIDDK NIH HHS P01 DK068055NIDDK NIH HHS R01 DK057061
6 · The paper itself

Abstract

Normal function of the gastrointestinal tract involves the coordinated activity of several cell types Human disorders of motor function of the gastrointestinal tract are often associated with changes in the number of these cells. For example, in diabetic patients, abnormalities in gastrointestinal transit are associated with changes in nerves and interstitial cells of Cajal (ICC), two key cells that generate and regulate motility. ICC are cells of mesenchymal origin that function as pacemakers and amplify neuronal signals in the gastrointestinal tract. Quantifying the changes in number of specific cell types in tissues from patients with motility disorders is challenging and requires immunolabeling for specific antigens. The shape of nuclei differs between the cell types in the wall of the gastrointestinal tract. Therefore the objective of this study was to determine whether cell nuclei can be classified by analyzing the 3D morphology of the nuclei. Furthermore, the orientation of the long axis of nuclei changes within and between the muscle layers. These features can be used to classify and differentially label the nuclei in confocal volume images of the tissue by computing the principal axis of the coordinates of the set of voxels forming each nucleus and thereby to identify cells by their nuclear morphology. Using this approach, we were able to separate and quantify nuclei in the smooth muscle layers of the tissue. Therefore we conclude that computer-aided classification of cell nuclei can be used to identify changes in the cell types expressed in gastrointestinal smooth muscle.

Indexed as

cell differentiationconfocal microscopyfeature extractionprincipal component analysis

Identifiers

PMID25301986
PMCPMC4188371
OpenAlexW1985389525

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.