Evidence map›Paper›PMID 25301630›Full record

ArticleScience (New York, N.Y.)2014

Spatial and temporal diversity in genomic instability processes defines lung cancer evolution.

Elza C de Bruin, Nicholas McGranahan, Richard Mitter, Max Salm, David C Wedge, Lucy Yates, Mariam Jamal-Hanjani, Seema Shafi, Nirupa Murugaesu, Andrew J Rowan and 33 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05189171 (MicroOrganoSphere Drug Screen to Lead Care), which is not on this map. Cited by 667 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
667citing papers in PubMed, 1 pooled it
45.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05189171 completednot on this mapstarted 2022, after this paper: background citation

MicroOrganoSphere Drug Screen to Lead Care (MODEL) Precision Oncology Pilot Trial in Colorectal Cancer (CRC)

TypeobservationalSponsorXilis, Inc.Ran2022 to 2024Enrolled46ConditionsColorectal NeoplasmsArmsMicroOrganoSphere (MOS) drug screen
3 · Its place in the literature

Who cites it

667 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,155 citations in OpenAlex.

  1. Pooled it
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  4. Inferring gene expression profiles of tumor clones.Bioinformatics (Oxford, England) · 2026
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607 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

43 authors at 10 institutions in 5 countries.

Elza C de BruinCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK.
Nicholas McGranahanCancer Research UK London Research Institute, London WC2A 3LY, UK. Centre for Mathematics and Physics in the Life Science and Experimental Biology (CoMPLEX), University College London, London WC1E 6BT, UK.
Richard MitterCancer Research UK London Research Institute, London WC2A 3LY, UK.
Max SalmCancer Research UK London Research Institute, London WC2A 3LY, UK.
David C WedgeWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK.
Lucy YatesWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK. University of Cambridge, Cambridge CB2 1TN, UK.
Mariam Jamal-HanjaniCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK.
Seema ShafiCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK.
Nirupa MurugaesuCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK.
Andrew J RowanCancer Research UK London Research Institute, London WC2A 3LY, UK.
Eva GrönroosCancer Research UK London Research Institute, London WC2A 3LY, UK.
Madiha A MuhammadCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK.
Stuart HorswellCancer Research UK London Research Institute, London WC2A 3LY, UK.
Marco GerlingerCancer Research UK London Research Institute, London WC2A 3LY, UK.
Ignacio VarelaInstituto de Biomedicina y Biotecnología de Cantabria (CSIC-UC-Sodercan), Departamento de Biología Molecular, Universidad de Cantabria, Santander, Spain.
David JonesWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK.
John MarshallWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK.
Thierry VoetWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK. Department of Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Peter Van LooWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK. Department of Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Doris M RasslPapworth Hospital NHS Foundation Trust, Cambridge CB23 3RE, UK.
Robert C RintoulPapworth Hospital NHS Foundation Trust, Cambridge CB23 3RE, UK.
Sam M JanesLungs for Living Research Centre, University College London, London WC1E 6BT, UK.
Siow-Ming LeeCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK. University College London Hospitals, London NW1 2BU, UK.
Martin ForsterCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK. University College London Hospitals, London NW1 2BU, UK.
Tanya AhmadUniversity College London Hospitals, London NW1 2BU, UK.
David LawrenceUniversity College London Hospitals, London NW1 2BU, UK.
Mary FalzonUniversity College London Hospitals, London NW1 2BU, UK.
Arrigo CapitanioUniversity College London Hospitals, London NW1 2BU, UK.
Timothy T HarkinsThermo Fisher Scientific, Carlsbad, CA 92008, USA.
Clarence C LeeThermo Fisher Scientific, Carlsbad, CA 92008, USA.
Warren TomThermo Fisher Scientific, Carlsbad, CA 92008, USA.
Enock TeefeThermo Fisher Scientific, Carlsbad, CA 92008, USA.
Shann-Ching ChenThermo Fisher Scientific, Carlsbad, CA 92008, USA.
Sharmin BegumCancer Research UK London Research Institute, London WC2A 3LY, UK.
Adam RabinowitzCancer Research UK London Research Institute, London WC2A 3LY, UK.
Benjamin PhillimoreCancer Research UK London Research Institute, London WC2A 3LY, UK.
Bradley Spencer-DeneCancer Research UK London Research Institute, London WC2A 3LY, UK.
Gordon StampCancer Research UK London Research Institute, London WC2A 3LY, UK.
Zoltan SzallasiTechnical University of Denmark, 2800 Kongens Lyngby, Denmark. Children's Hospital Informatics Program, Harvard Medical School, Boston, MA 02115, USA.
Nik MatthewsCancer Research UK London Research Institute, London WC2A 3LY, UK.
Aengus StewartCancer Research UK London Research Institute, London WC2A 3LY, UK.
Peter CampbellWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK.
Charles SwantonCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London WC1E 6BT, UK. Cancer Research UK London Research Institute, London WC2A 3LY, UK. charles.swanton@cancer.org.uk.
Cancer Research UK · GBWellcome Sanger Institute · GBThermo Fisher Scientific (United States) · USUniversity College London · GBLondon Cancer · GBRoyal London Hospital · GBPapworth Hospital NHS Foundation Trust · GBHarvard University · USInstituto de Biomedicina y Biotecnología de Cantabria · ESUniversity of Cambridge · GB

Funding

Cancer Research UK 17001Cancer Research UK 17786Cancer Research UK 18377Cancer Research UK A11590Cancer Research UK A17786Cancer Research UK A19310Cancer Research UK A4688Medical Research Council G0902275Wellcome Trust 088340Wellcome Trust 091730Wellcome Trust 105104
6 · The paper itself

Abstract

Spatial and temporal dissection of the genomic changes occurring during the evolution of human non-small cell lung cancer (NSCLC) may help elucidate the basis for its dismal prognosis. We sequenced 25 spatially distinct regions from seven operable NSCLCs and found evidence of branched evolution, with driver mutations arising before and after subclonal diversification. There was pronounced intratumor heterogeneity in copy number alterations, translocations, and mutations associated with APOBEC cytidine deaminase activity. Despite maintained carcinogen exposure, tumors from smokers showed a relative decrease in smoking-related mutations over time, accompanied by an increase in APOBEC-associated mutations. In tumors from former smokers, genome-doubling occurred within a smoking-signature context before subclonal diversification, which suggested that a long period of tumor latency had preceded clinical detection. The regionally separated driver mutations, coupled with the relentless and heterogeneous nature of the genome instability processes, are likely to confound treatment success in NSCLC.

Indexed as

Genetic HeterogeneityGenomic InstabilityAPOBEC-1 DeaminaseCarcinogensCarcinoma, Non-Small-Cell LungCytidine DeaminaseEvolution, MolecularGene DosageHumansLung NeoplasmsMutationNeoplasm Recurrence, LocalPrognosisSmokingTranslocation, GeneticTumor Cells, CulturedAPOBEC-1 DeaminaseAPOBEC1 protein, humanCarcinogensCytidine Deaminase

Identifiers

PMID25301630
PMCPMC4636050
OpenAlexW2108371618

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.