Evidence map›Paper›PMID 25300304›Full record

ArticleScientific reports2014

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development.

Yue Him Wong, Taewoo Ryu, Loqmane Seridi, Yanal Ghosheh, Salim Bougouffa, Pei-Yuan Qian, Timothy Ravasi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. The genome sequence of the ruby bryozoan,Wellcome open research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yue Him WongThe division of Life Science, School of Science, the Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong.
Taewoo RyuComputational Biosciences Research Center, Division of Biological and Environmental Sciences &Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Loqmane SeridiComputational Biosciences Research Center, Division of Biological and Environmental Sciences &Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Yanal GhoshehComputational Biosciences Research Center, Division of Biological and Environmental Sciences &Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Salim BougouffaComputational Biosciences Research Center, Division of Biological and Environmental Sciences &Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Pei-Yuan QianThe division of Life Science, School of Science, the Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong.
Timothy Ravasi1] Computational Biosciences Research Center, Division of Biological and Environmental Sciences &Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia [2] Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
King Abdullah University of Science and Technology · SAUniversity of Hong Kong · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The most recent phylogenomic study suggested that Bryozoa (Ectoprocta), Brachiopoda, and Phoronida are monophyletic, implying that the lophophore of bryozoans, phoronids and brachiopods is a synapomorphy. Understanding the molecular mechanisms of the lophophore development of the Lophophorata clade can therefore provide us a new insight into the formation of the diverse morphological traits in metazoans. In the present study, we profiled the transcriptome of the Bryozoan (Ectoproct) Bugula neritina during the swimming larval stage (SW) and the early (4 h) and late (24 h) metamorphic stages using the Illumina HiSeq2000 platform. Various genes that function in development, the immune response and neurogenesis showed differential expression levels during metamorphosis. In situ hybridization of 23 genes that participate in the Wnt, BMP, Notch, and Hedgehog signaling pathways revealed their regulatory roles in the development of the lophophore and the ancestrula digestive tract. Our findings support the hypothesis that developmental precursors of the lophophore and the ancestrula digestive tract are pre-patterned by the differential expression of key developmental genes according to their fate. This study provides a foundation to better understand the developmental divergence and/or convergence among developmental precursors of the lophophore of bryozoans, branchiopods and phoronids.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalAnimalsBryozoaLarvaMetamorphosis, BiologicalMolecular Sequence DataPhylogeny

Identifiers

PMID25300304
PMCPMC4192642
OpenAlexW2071955932

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.