Evidence map›Paper›PMID 25299644›Full record

ArticlePLoS genetics2014

Developmentally-regulated excision of the SPβ prophage reconstitutes a gene required for spore envelope maturation in Bacillus subtilis.

Kimihiro Abe, Yuta Kawano, Keito Iwamoto, Kenji Arai, Yuki Maruyama, Patrick Eichenberger, Tsutomu Sato

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 94 citations in OpenAlex.

  1. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Draft genome ofMicrobiology resource announcements · 2024
    Article
  15. Article
  16. Identification and characterization of integrated prophages and CRISPR-Cas system in Bacillus subtilis RS10 genome.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  17. Biofilm · 2023
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Kimihiro AbeResearch Center of Micro-Nano Technology, Hosei University, Koganei, Tokyo, Japan.
Yuta KawanoDepartment of Frontier Bioscience, Hosei University, Koganei, Tokyo, Japan.
Keito IwamotoDepartment of Frontier Bioscience, Hosei University, Koganei, Tokyo, Japan.
Kenji AraiDepartment of Frontier Bioscience, Hosei University, Koganei, Tokyo, Japan.
Yuki MaruyamaDepartment of Frontier Bioscience, Hosei University, Koganei, Tokyo, Japan.
Patrick EichenbergerCenter for Genomics and Systems Biology, New York University, New York, New York, United States of America.
Tsutomu SatoResearch Center of Micro-Nano Technology, Hosei University, Koganei, Tokyo, Japan; Department of Frontier Bioscience, Hosei University, Koganei, Tokyo, Japan.
Hosei University · JPNew York University · US

Funding

A systems level analysis of spore coat assembly in Bacillus subtilisR01GM081571 · NIGMS · NEW YORK UNIVERSITY · PI EICHENBERGER, PATRICK · 2008 to 2012
$1.5M
NIGMS NIH HHS GM081571NIGMS NIH HHS R01 GM081571
6 · The paper itself

Abstract

Temperate phages infect bacteria by injecting their DNA into bacterial cells, where it becomes incorporated into the host genome as a prophage. In the genome of Bacillus subtilis 168, an active prophage, SPβ, is inserted into a polysaccharide synthesis gene, spsM. Here, we show that a rearrangement occurs during sporulation to reconstitute a functional composite spsM gene by precise excision of SPβ from the chromosome. SPβ excision requires a putative site-specific recombinase, SprA, and an accessory protein, SprB. A minimized SPβ, where all the SPβ genes were deleted, except sprA and sprB, retained the SPβ excision activity during sporulation, demonstrating that sprA and sprB are necessary and sufficient for the excision. While expression of sprA was observed during vegetative growth, sprB was induced during sporulation and upon mitomycin C treatment, which triggers the phage lytic cycle. We also demonstrated that overexpression of sprB (but not of sprA) resulted in SPβ prophage excision without triggering the lytic cycle. These results suggest that sprB is the factor that controls the timing of phage excision. Furthermore, we provide evidence that spsM is essential for the addition of polysaccharides to the spore envelope. The presence of polysaccharides on the spore surface renders the spore hydrophilic in water. This property may be beneficial in allowing spores to disperse in natural environments via water flow. A similar rearrangement occurs in Bacillus amyloliquefaciens FZB42, where a SPβ-like element is excised during sporulation to reconstitute a polysaccharide synthesis gene, suggesting that this type of gene rearrangement is common in spore-forming bacteria because it can be spread by phage infection.

Indexed as

BacillusBacillus PhagesBacillus subtilisBacterial ProteinsGene Expression Regulation, BacterialGene Expression Regulation, ViralGene RearrangementMitomycinMutationProphagesSpores, BacterialBacterial ProteinsMitomycin

Identifiers

PMID25299644
PMCPMC4191935
OpenAlexW2047984143

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.