Evidence map›Paper›PMID 25299517›Full record

ArticlePLoS pathogens2014

Systematic analysis of Zn2Cys6 transcription factors required for development and pathogenicity by high-throughput gene knockout in the rice blast fungus.

Jianping Lu, Huijuan Cao, Lilin Zhang, Pengyun Huang, Fucheng Lin

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 200 citations in OpenAlex.

  1. Article
  2. Transcription FactorJournal of fungi (Basel, Switzerland) · 2026
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  5. Characterization ofJournal of fungi (Basel, Switzerland) · 2026
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  16. MaAzaR Influences Virulence ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  17. Article
  18. Functional Characterization of the Transcription Factor GeneJournal of fungi (Basel, Switzerland) · 2024
    Article
  19. Article
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jianping LuSchool of Life Sciences Zhejiang University, Hangzhou, Zhejiang Province, China.
Huijuan CaoBiotechnology Institute, Zhejiang University, Hangzhou, Zhejiang Province, China.
Lilin ZhangSchool of Life Sciences Zhejiang University, Hangzhou, Zhejiang Province, China.
Pengyun HuangSchool of Life Sciences Zhejiang University, Hangzhou, Zhejiang Province, China.
Fucheng LinBiotechnology Institute, Zhejiang University, Hangzhou, Zhejiang Province, China; China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, Henan Province, China.
Zhejiang University · CNTobacco Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Because of great challenges and workload in deleting genes on a large scale, the functions of most genes in pathogenic fungi are still unclear. In this study, we developed a high-throughput gene knockout system using a novel yeast-Escherichia-Agrobacterium shuttle vector, pKO1B, in the rice blast fungus Magnaporthe oryzae. Using this method, we deleted 104 fungal-specific Zn(2)Cys(6) transcription factor (TF) genes in M. oryzae. We then analyzed the phenotypes of these mutants with regard to growth, asexual and infection-related development, pathogenesis, and 9 abiotic stresses. The resulting data provide new insights into how this rice pathogen of global significance regulates important traits in the infection cycle through Zn(2)Cys(6)TF genes. A large variation in biological functions of Zn(2)Cys(6)TF genes was observed under the conditions tested. Sixty-one of 104 Zn(2)Cys(6) TF genes were found to be required for fungal development. In-depth analysis of TF genes revealed that TF genes involved in pathogenicity frequently tend to function in multiple development stages, and disclosed many highly conserved but unidentified functional TF genes of importance in the fungal kingdom. We further found that the virulence-required TF genes GPF1 and CNF2 have similar regulation mechanisms in the gene expression involved in pathogenicity. These experimental validations clearly demonstrated the value of a high-throughput gene knockout system in understanding the biological functions of genes on a genome scale in fungi, and provided a solid foundation for elucidating the gene expression network that regulates the development and pathogenicity of M. oryzae.

Indexed as

Fungal ProteinsGene Expression Regulation, FungalGene Knockout TechniquesMagnaportheMutationPhenotypePlant DiseasesTranscription FactorsVirulenceFungal ProteinsTranscription Factors

Identifiers

PMID25299517
PMCPMC4192604
OpenAlexW2006568893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.