Evidence map›Paper›PMID 25298532›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Molecular basis of mycobacterial lipid antigen presentation by CD1c and its recognition by αβ T cells.

Sobhan Roy, Dalam Ly, Nan-Sheng Li, John D Altman, Joseph A Piccirilli, D Branch Moody, Erin J Adams

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Sideways lipid presentation by the antigen-presenting molecule CD1c.bioRxiv : the preprint server for biology · 2025
    Article
  6. Three-Dimensional Modeling ofAntibodies (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Review
  9. Article
  10. Neoantigens: new hope for cancer therapy.Frontiers in oncology · 2025
    Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Unconventional T cells and kidney disease.Nature reviews. Nephrology · 2021
    Review
  18. Article
  19. mBio · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sobhan RoyDepartments of Biochemistry and Molecular Biology and.
Dalam LyDivision of Rheumatology, Immunology and Allergy, Brigham and Women's Hospital, Boston, MA 02115; and.
Nan-Sheng LiDepartments of Biochemistry and Molecular Biology and.
John D AltmanEmory Vaccine Center at Yerkes, Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30329.
Joseph A PiccirilliDepartments of Biochemistry and Molecular Biology and Chemistry and.
D Branch MoodyDivision of Rheumatology, Immunology and Allergy, Brigham and Women's Hospital, Boston, MA 02115; and.
Erin J AdamsDepartments of Biochemistry and Molecular Biology and Committee on Immunology, University of Chicago, Chicago, IL 60637; ejadams@uchicago.edu.
Brigham and Women's Hospital · USEmory University · USUniversity of Chicago · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
YNPRC NHP CLINICAL MEDICINE RESIDENCY PROGRAM - SUPPLEMENTP51RR000165 · NCRR · EMORY UNIVERSITY · PI ALTMAN, JOHN DAVID · 1985 to 2011
$114.0M
T cell response to CDI-restricted lipids in tuberculosisR01AI049313 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2001 to 2025
$10.6M
CD1 Presentation of Self Lipids to Human T CellsR01AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2002 to 2024
$9.4M
Molecular Recognition of Ligand by the Gamma Delta T Cell ReceptorR01AI073922 · NIAID · UNIVERSITY OF CHICAGO · PI ADAMS, ERIN JUNE · 2007 to 2016
$3.8M
CHAPERONE-ASSISTED RNA CRYSTALLOGRAPHY - Resubmission 01R01GM102489 · NIGMS · UNIVERSITY OF CHICAGO · PI PICCIRILLI, JOSEPH ANTHONY · 2013 to 2021
$2.9M
CD1 autoreactive T cells in human inflammatory skin diseaseR37AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI DAVID Branch MOODY · 2025 to 2026
$1.1M
Molecular studies of lipid presentation and T cell recognition of CD1cR56AI097386 · NIAID · UNIVERSITY OF CHICAGO · PI ADAMS, ERIN JUNE · 2013 to 2013
$366k
NCRR NIH HHS P51 RR000165NIAID NIH HHS HHSN272201300006CNIAID NIH HHS R01 AI049313NIAID NIH HHS R01AI049313NIAID NIH HHS R01 AI073922NIAID NIH HHS R01AI073922NIAID NIH HHS R56_AI097386NIAMS NIH HHS R01 AR048632NIAMS NIH HHS R01AR048632NIAMS NIH HHS R37 AR048632NIGMS NIH HHS R01 GM102489NIGMS NIH HHS R01GM102489NIH HHS P51 OD011132
6 · The paper itself

Abstract

CD1c is a member of the group 1 CD1 family of proteins that are specialized for lipid antigen presentation. Despite high cell surface expression of CD1c on key antigen-presenting cells and the discovery of its mycobacterial lipid antigen presentation capability, the molecular basis of CD1c recognition by T cells is unknown. Here we present a comprehensive functional and molecular analysis of αβ T-cell receptor (TCR) recognition of CD1c presenting mycobacterial phosphomycoketide antigens. Our structure of CD1c with the mycobacterial phosphomycoketide (PM) shows similarities to that of CD1c-mannosyl-β1-phosphomycoketide in that the A' pocket accommodates the mycoketide alkyl chain; however, the phosphate head-group of PM is shifted ∼6 Å in relation to that of mannosyl-β1-PM. We also demonstrate a bona fide interaction between six human TCRs and CD1c-mycoketide complexes, measuring high to moderate affinities. The crystal structure of the DN6 TCR and mutagenic studies reveal a requirement of five complementarity determining region (CDR) loops for CD1c recognition. Furthermore, mutagenesis of CD1c reveals residues in both the α1 and α2 helices involved in TCR recognition, yet not entirely overlapping among the examined TCRs. Unlike patterns for MHC I, no archetypical binding footprint is predicted to be shared by CD1c-reactive TCRs, even when recognizing the same or similar antigens.

Indexed as

Amino AcidsAntigen PresentationAntigens, BacterialAntigens, CD1Clone CellsCrystallography, X-RayGlycosylationHumansLipidsModels, MolecularMycobacteriumProtein BindingProtein FootprintingProtein Structure, SecondaryReceptors, Antigen, T-Cell, alpha-betaT-LymphocytesAmino AcidsAntigens, BacterialAntigens, CD1LipidsReceptors, Antigen, T-Cell, alpha-betagroup 1 CD1Mycobacterium tuberculosisT-cell reactivity

Identifiers

PMID25298532
PMCPMC4217448
OpenAlexW1966680107

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.