Evidence map›Paper›PMID 25297329›Full record

ArticleJournal of clinical microbiology2014

Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry using the Vitek MS system for rapid and accurate identification of dermatophytes on solid cultures.

Sophie De Respinis, Valérie Monnin, Victoria Girard, Martin Welker, Maud Arsac, Béatrice Cellière, Géraldine Durand, Philipp P Bosshard, Claudio Farina, Marco Passera and 3 more

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Seborrheic dermatitis-like adult tinea capitis due toMedical mycology case reports · 2023
    Article
  5. Article
  6. Mass spectrometry in research laboratories and clinical diagnostic: a new era in medical mycology.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Review
  7. Article
  8. Review
  9. Identification of Zoophilic Dermatophytes Using MALDI-TOF Mass Spectrometry.Frontiers in cellular and infection microbiology · 2021
    Article
  10. Article
  11. Recent trends in rapid diagnostic techniques for dermatophytosis.International journal of veterinary science and medicine · 2020
    Review
  12. Tinea gladiatorum due toCurrent medical mycology · 2020
    Article
  13. Epidemiology and Diagnostic Perspectives of Dermatophytoses.Journal of fungi (Basel, Switzerland) · 2020
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sophie De RespinisLaboratory of Applied Microbiology, University of Applied Sciences and Arts of Southern Switzerland, Bellinzona, Switzerland sophie.derespinis@supsi.ch.
Valérie MonninbioMérieux SA, Unit Microbiology, R&D Microbiology, La Balme Les Grottes, France.
Victoria GirardbioMérieux SA, Unit Microbiology, R&D Microbiology, La Balme Les Grottes, France.
Martin WelkerbioMérieux SA, Unit Microbiology, R&D Microbiology, La Balme Les Grottes, France.
Maud ArsacbioMérieux SA, Unit Microbiology, R&D Microbiology, La Balme Les Grottes, France.
Béatrice CellièrebioMérieux SA, Unit Microbiology, R&D Microbiology, La Balme Les Grottes, France.
Géraldine DurandbioMérieux SA, Unit Microbiology, R&D Microbiology, La Balme Les Grottes, France.
Philipp P BosshardDepartment of Dermatology, University Hospital of Zurich, Zurich, Switzerland.
Claudio FarinaMicrobiology and Virology Unit, Papa Giovanni XXIII Hospital, Bergamo, Italy.
Marco PasseraMicrobiology and Virology Unit, Papa Giovanni XXIII Hospital, Bergamo, Italy.
Alex Van BelkumbioMérieux SA, Unit Microbiology, R&D Microbiology, La Balme Les Grottes, France.
Orlando PetriniPOLE Pharma Consulting, Breganzona, Switzerland.
Mauro TonollaLaboratory of Applied Microbiology, University of Applied Sciences and Arts of Southern Switzerland, Bellinzona, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The objective of this research was to extend the Vitek MS fungal knowledge base version 2.0.0 to allow the robust identification of clinically relevant dermatophytes, using a variety of strains, incubation times, and growth conditions. First, we established a quick and reliable method for sample preparation to obtain a reliable and reproducible identification independently of the growth conditions. The Vitek MS V2.0.0 fungal knowledge base was then expanded using 134 well-characterized strains belonging to 17 species in the genera Epidermophyton, Microsporum, and Trichophyton. Cluster analysis based on mass spectrum similarity indicated good species discrimination independently of the culture conditions. We achieved a good separation of the subpopulations of the Trichophyton anamorph of Arthroderma benhamiae and of anthropophilic and zoophilic strains of Trichophyton interdigitale. Overall, the 1,130 mass spectra obtained for dermatophytes gave an estimated identification performance of 98.4%. The expanded fungal knowledge base was then validated using 131 clinical isolates of dermatophytes belonging to 13 taxa. For 8 taxa all strains were correctly identified, and for 3 the rate of successful identification was >90%; 75% (6/8) of the M. gypseum strains were correctly identified, whereas only 47% (18/38) of the African T. rubrum population (also called T. soudanense) were recognized accurately, with a large quantity of strains misidentified as T. violaceum, demonstrating the close relationship of these two taxa. The method of sample preparation was fast and efficient and the expanded Vitek MS fungal knowledge base reliable and robust, allowing reproducible dermatophyte identifications in the routine laboratory.

Indexed as

ArthrodermataceaeCluster AnalysisDermatomycosesHumansMicrobiological TechniquesMycologySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTime Factors

Identifiers

PMID25297329
PMCPMC4313273

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.