Evidence map›Paper›PMID 25296760›Full record

ArticleThe Journal of biological chemistry2014

Covalent modification of the NF-κB essential modulator (NEMO) by a chemical compound can regulate its ubiquitin binding properties in vitro.

Christopher Hooper, Shawn S Jackson, Emma E Coughlin, Joshua J Coon, Shigeki Miyamoto

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Targeting TDP-43 Pathology Alleviates Cognitive and Motor Deficits Caused by Chronic Cerebral Hypoperfusion.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Article
  4. Article
  5. Article
  6. Non-coding RNAs Shaping Muscle.Frontiers in cell and developmental biology · 2019
    Review
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Christopher HooperFrom the McArdle Laboratory for Cancer Research, Department of Oncology, Cellular and Molecular Biology Program, University of Wisconsin-Madison, Madison, Wisconsin 53705 and.
Shawn S JacksonFrom the McArdle Laboratory for Cancer Research, Department of Oncology, Cellular and Molecular Biology Program, University of Wisconsin-Madison, Madison, Wisconsin 53705 and Medical Scientist Training Program, and.
Emma E CoughlinGenome Center of Wisconsin, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Joshua J CoonGenome Center of Wisconsin, University of Wisconsin-Madison, Madison, Wisconsin 53706 Department of Chemistry, Department of Biomolecular Chemistry, and.
Shigeki MiyamotoFrom the McArdle Laboratory for Cancer Research, Department of Oncology, Cellular and Molecular Biology Program, University of Wisconsin-Madison, Madison, Wisconsin 53705 and Medical Scientist Training Program, and smiyamot@wisc.edu.
University of Wisconsin–Madison · US

Funding

INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Regulation of NEMO modifications in radiation-induced NF-kB signalingR01CA077474 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI MIYAMOTO, SHIGEKI · 2000 to 2014
$4.0M
Regulation of NF-kappaB by Small Ubiquitin-Like ModifiersR01GM083681 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MIYAMOTO, SHIGEKI · 2010 to 2013
$1.1M
Regulation of NF-kB through a Novel NEMO-Ubiquitin InteractionF31CA186551 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI HOOPER, CHRISTOPHER P · 2014 to 2015
$60k
NCI NIH HHS F31 CA186551NCI NIH HHS R01 CA077474NIGMS NIH HHS R01 GM083681NIGMS NIH HHS T32 GM008692
6 · The paper itself

Abstract

Post-translational modification by ubiquitin plays important roles in multiple physiological and pathological processes. Ubiquitin-binding proteins play a critical role in recognizing and relaying polyubiquitin-based signaling. NEMO (NF-κB Essential Modulator) is a central player in canonical NF-κB signaling whose major function is to bind to Lys-63- and/or M1- (or linear) linked polyubiquitin chains generated in response to cell stimulation. Here we show that Withaferin A (WA), a steroidal lactone, causes a change in NEMO's interaction with specific types of polyubiquitin chains in vitro. WA induces full-length recombinant NEMO to bind to long Lys-48-linked polyubiquitin chains but not tetra-ubiquitin species. Significantly, the UBAN (ubiquitin binding in ABIN and NEMO) domain, essential for the ability of NEMO to bind M1/Lys-63-linked polyubiquitin, is dispensable for the WA-induced gain-of-function activity. Mass spectrometric analysis demonstrated that WA covalently modifies NEMO on a cysteine residue within the C-terminal zinc finger (ZF) domain. Point mutations to the ZF can reverse the WA-induced Lys-48-polyubiquitin binding phenotype. Our study demonstrates the feasibility of directly altering the ubiquitin interaction properties of an ubiquitin-binding protein by a chemical compound, thereby shedding light on a novel drug class to potentially alter polyubiquitin-based cellular processes.

Indexed as

AnimalsHEK293 CellsHumansI-kappa B KinaseIntracellular Signaling Peptides and ProteinsMiceMice, KnockoutRecombinant ProteinsUbiquitinUbiquitinationWithanolidesZinc FingersI-kappa B KinaseIKBKG protein, humanIntracellular Signaling Peptides and ProteinsNEMO protein, mouseRecombinant ProteinsUbiquitinwithaferin AWithanolidesNF-kappa B (NF-κB)NF-κB Essential ModulatorPolyubiquitin ChainRecombinant Protein ExpressionSmall MoleculeWithaferin AZinc Finger

Identifiers

PMID25296760
PMCPMC4246077
OpenAlexW2010725426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.