Evidence map›Paper›PMID 25296323›Full record

ArticleBiophysical journal2014

Mapping membrane protein backbone dynamics: a comparison of site-directed spin labeling with NMR 15N-relaxation measurements.

Ryan H Lo, Brett M Kroncke, Tsega L Solomon, Linda Columbus

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ryan H LoDepartment of Chemistry, University of Virginia, Charlottesville, Virginia.
Brett M KronckeDepartment of Chemistry, University of Virginia, Charlottesville, Virginia.
Tsega L SolomonDepartment of Chemistry, University of Virginia, Charlottesville, Virginia.
Linda ColumbusDepartment of Chemistry, University of Virginia, Charlottesville, Virginia. Electronic address: columbus@virginia.edu.
University of Virginia · US

Funding

Structure and dynamics of bacterial membrane protein - receptor interactionsR01GM087828 · NIGMS · UNIVERSITY OF VIRGINIA · PI COLUMBUS, LINDA M · 2009 to 2018
$2.7M
NIGMS NIH HHS R01 GM087828NIGMS NIH HHS R01-GM087828
6 · The paper itself

Abstract

The ability to detect nanosecond backbone dynamics with site-directed spin labeling (SDSL) in soluble proteins has been well established. However, for membrane proteins, the nitroxide appears to have more interactions with the protein surface, potentially hindering the sensitivity to backbone motions. To determine whether membrane protein backbone dynamics could be mapped with SDSL, a nitroxide was introduced at 55 independent sites in a model polytopic membrane protein, TM0026. Electron paramagnetic resonance spectral parameters were compared with NMR (15)N-relaxation data. Sequential scans revealed backbone dynamics with the same trends observed for the R1 relaxation rate, suggesting that nitroxide dynamics remain coupled to the backbone on membrane proteins.

Indexed as

Spin LabelsAmino Acid SequenceBinding SitesElectron Spin Resonance SpectroscopyKineticsMagnetic Resonance SpectroscopyMembrane ProteinsMolecular Sequence DataMutagenesis, Site-DirectedMutationNitrogen OxidesMembrane ProteinsNitrogen OxidesnitroxylSpin Labels

Identifiers

PMID25296323
PMCPMC4190660
OpenAlexW1976086144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.