Evidence map›Paper›PMID 25294878›Full record

ArticleThe Journal of biological chemistry2014

Amyloid formation by human carboxypeptidase D transthyretin-like domain under physiological conditions.

Javier Garcia-Pardo, Ricardo Graña-Montes, Marc Fernandez-Mendez, Angels Ruyra, Nerea Roher, Francesc X Aviles, Julia Lorenzo, Salvador Ventura

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Structure and Aggregation Mechanisms in Amyloids.Molecules (Basel, Switzerland) · 2020
    Review
  5. Causative Links between Protein Aggregation and Oxidative Stress: A Review.International journal of molecular sciences · 2019
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Javier Garcia-PardoFrom the Institut de Biotecnologia i Biomedicina, Departaments de Bioquimica i Biologia Molecular and.
Ricardo Graña-MontesFrom the Institut de Biotecnologia i Biomedicina, Departaments de Bioquimica i Biologia Molecular and.
Marc Fernandez-MendezFrom the Institut de Biotecnologia i Biomedicina, Departaments de Bioquimica i Biologia Molecular and.
Angels RuyraFrom the Institut de Biotecnologia i Biomedicina.
Nerea RoherFrom the Institut de Biotecnologia i Biomedicina, Biologia Cel·lular, Immunologia i Fisiologia Animal, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.
Francesc X AvilesFrom the Institut de Biotecnologia i Biomedicina, Departaments de Bioquimica i Biologia Molecular and.
Julia LorenzoFrom the Institut de Biotecnologia i Biomedicina, Departaments de Bioquimica i Biologia Molecular and julia.lorenzo@uab.es.
Salvador VenturaFrom the Institut de Biotecnologia i Biomedicina, Departaments de Bioquimica i Biologia Molecular and salvador.ventura@uab.es.
Universitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein aggregation is linked to a growing list of diseases, but it is also an intrinsic property of polypeptides, because the formation of functional globular proteins comes at the expense of an inherent aggregation propensity. Certain proteins can access aggregation-prone states from native-like conformations without the need to cross the energy barrier for unfolding. This is the case of transthyretin (TTR), a homotetrameric protein whose dissociation into its monomers initiates the aggregation cascade. Domains with structural homology to TTR exist in a number of proteins, including the M14B subfamily carboxypeptidases. We show here that the monomeric transthyretin-like domain of human carboxypeptidase D aggregates under close to physiological conditions into amyloid structures, with the population of folded but aggregation-prone states being controlled by the conformational stability of the domain. We thus confirm that the TTR fold keeps a generic residual aggregation propensity upon folding, resulting from the presence of preformed amyloidogenic β-strands in the native state. These structural elements should serve for functional/structural purposes, because they have not been purged out by evolution, but at the same time they put proteins like carboxypeptidase D at risk of aggregation in biological environments and thus can potentially lead to deposition diseases.

Indexed as

Amino Acid SequenceAmyloidEscherichia coliGene ExpressionHumansHydrogen-Ion ConcentrationKineticsModels, MolecularMolecular Sequence DataPrealbuminProtein AggregatesProtein FoldingProteinsProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryAmyloidmetallocarboxypeptidase DPrealbuminProtein AggregatesProteinsRecombinant ProteinsAmyloidCarboxypeptidaseProtein AggregationProtein MisfoldingProtein StabilityTransthyretin

Identifiers

PMID25294878
PMCPMC4256313
OpenAlexW1968273706

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.