Evidence map›Paper›PMID 25294823›Full record

ArticleNucleic acids research2014

Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity.

Alasdair J E Gordon, Dominik Satory, Mengyu Wang, Jennifer A Halliday, Ido Golding, Christophe Herman

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Alasdair J E GordonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Dominik SatoryDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Mengyu WangVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, Texas, 77030, USA.
Jennifer A HallidayDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Ido GoldingVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, Texas, 77030, USA Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Christophe HermanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas 77030, USA herman@bcm.edu.
Baylor College of Medicine · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
Virology CoreP30AI036211 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BUTEL, JANET S · 1994 to 2015
$21.7M
GENE REGULATION IN PHAGE LAMBDA: A REAL-TIME STUDY WITH SINGLE-EVENT RESOLUTIONR01GM082837 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GOLDING, IDO · 2008 to 2020
$4.0M
Molecular Noise, Transcription Errors and Heritable Phenotypic ChangeR01GM088653 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI HERMAN, CHRISTOPHE · 2010 to 2019
$3.1M
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
NCI NIH HHS CA125123NCRR NIH HHS RR024574NIAID NIH HHS AI036211NIGMS NIH HHS 1R01GM88635NIGMS NIH HHS R01 GM082837NIGMS NIH HHS R01 GM088653
6 · The paper itself

Abstract

Living in an oxygen-rich environment is dangerous for a cell. Reactive oxygen species can damage DNA, RNA, protein and lipids. The MutT protein in Escherichia coli removes 8-oxo-deoxyguanosine triphosphate (8-oxo-dGTP) and 8-oxo-guanosine triphosphate (8-oxo-GTP) from the nucleotide pools precluding incorporation into DNA and RNA. While 8-oxo-dGTP incorporation into DNA is mutagenic, it is not clear if 8-oxo-GTP incorporation into RNA can have phenotypic consequences for the cell. We use a bistable epigenetic switch sensitive to transcription errors in the Escherichia coli lacI transcript to monitor transient RNA errors. We do not observe any increase in epigenetic switching in mutT cells. We revisit the original observation of partial phenotypic suppression of a lacZamber allele in a mutT background that was attributed to RNA errors. We find that Lac+ revertants can completely account for the increase in β-galactosidase levels in mutT lacZamber cultures, without invoking participation of transient transcription errors. Moreover, we observe a fluctuation type of distribution of β-galactosidase appearance in a growing culture, consistent with Lac+ DNA revertant events. We conclude that the absence of MutT produces a DNA mutator but does not equally create an RNA mutator.

Indexed as

Transcription, Geneticbeta-GalactosidaseDeoxyguanine NucleotidesEpigenesis, GeneticEscherichia coliEscherichia coli ProteinsGene DeletionGene Regulatory NetworksLac OperonLac RepressorsMutationPyrophosphatases8-oxodeoxyguanosine triphosphatebeta-GalactosidaseDeoxyguanine NucleotidesEscherichia coli ProteinsLacI protein, E coliLac RepressorsmutT protein, E coliPyrophosphatases

Identifiers

PMID25294823
PMCPMC4231768
OpenAlexW2106708096

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.