Evidence map›Paper›PMID 25294124›Full record

ArticleNeurogenetics2015

An exome study of Parkinson's disease in Sardinia, a Mediterranean genetic isolate.

Marialuisa Quadri, Xu Yang, Giovanni Cossu, Simone Olgiati, Valeria M Saddi, Guido J Breedveld, Limei Ouyang, Jingchu Hu, Na Xu, Josja Graafland and 20 more

Abstract read
PubMed Publisher
In one paragraph

Article in Neurogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Utility and implications of exome sequencing in early-onset Parkinson's disease.Movement disorders : official journal of the Movement Disorder Society · 2019
    Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 14 institutions in 7 countries.

Marialuisa QuadriDepartment of Clinical Genetics, Erasmus MC, PO Box 2040, 3000, CA, Rotterdam, The Netherlands.
Xu Yang
Giovanni Cossu
Simone Olgiati
Valeria M Saddi
Guido J Breedveld
Limei Ouyang
Jingchu Hu
Na Xu
Josja Graafland
Valeria Ricchi
Daniela Murgia
Leonor Correia Guedes
Claudio Mariani
Maria J Marti
Patrizia Tarantino
Rosanna Asselta
Francesc Valldeoriola
Monica Gagliardi
Gianni Pezzoli
Mario Ezquerra
Aldo Quattrone
Joaquim Ferreira
Grazia Annesi
Stefano Goldwurm
Eduardo Tolosa
Ben A Oostra
Maurizio Melis
Jun Wang
Vincenzo Bonifati
Azienda Ospedaliera G. Brotzu · ITBGI Group (China) · CNErasmus MC · NLErasmus University Rotterdam · NLIstituti Clinici di Perfezionamento · ITMagna Graecia University · ITNational Research Council · ITUniversitat de Barcelona · ESUniversity of Lisbon · PTATS Sardegna (Italy) · ITCentro de Investigación Biomédica en Red · ESFundació Clínic per a la Recerca Biomèdica · ESNovo Nordisk Foundation · DKUniversity of Milan · IT

Funding

Telethon GTB12001
6 · The paper itself

Abstract

Parkinson's disease (PD) is a common neurodegenerative disorder of complex aetiology. Rare, highly penetrant PD-causing mutations and common risk factors of small effect size have been identified in several genes/loci. However, these mutations and risk factors only explain a fraction of the disease burden, suggesting that additional, substantial genetic determinants remain to be found. Genetically isolated populations offer advantages for dissecting the genetic architecture of complex disorders, such as PD. We performed exome sequencing in 100 unrelated PD patients from Sardinia, a genetic isolate. SNPs absent from dbSNP129 and 1000 Genomes, shared by at least five patients, and of functional effects were genotyped in an independent Sardinian case-control sample (n = 500). Variants associated with PD with nominal p value <0.05 and those with odds ratio (OR) ≥3 were validated by Sanger sequencing and typed in a replication sample of 2965 patients and 2678 controls from Italy, Spain, and Portugal. We identified novel moderately rare variants in several genes, including SCAPER, HYDIN, UBE2H, EZR, MMRN2 and OGFOD1 that were specifically present in PD patients or enriched among them, nominating these as novel candidate risk genes for PD, although no variants achieved genome-wide significance after Bonferroni correction. Our results suggest that the genetic bases of PD are highly heterogeneous, with implications for the design of future large-scale exome or whole-genome analyses of this disease.

Indexed as

ExomeMutationCase-Control StudiesDNA Mutational AnalysisFemaleGene FrequencyGenetic Association StudiesGenetic Predisposition to DiseaseHumansItalyMaleParkinson DiseasePolymorphism, Single NucleotideRisk Factors

Identifiers

PMID25294124
OpenAlexW2017080229

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.