Evidence map›Paper›PMID 25293717›Full record

ArticleEuropean journal of human genetics : EJHG2015

Somatic neurofibromatosis type 1 (NF1) inactivation events in cutaneous neurofibromas of a single NF1 patient.

Denise Emmerich, Tomasz Zemojtel, Jochen Hecht, Peter Krawitz, Malte Spielmann, Jirko Kühnisch, Karolina Kobus, Monika Osswald, Verena Heinrich, Peter Berlien and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Contemporary Approach to Neurofibromatosis Type 1-Associated Malignant Peripheral Nerve Sheath Tumors.American Society of Clinical Oncology educational book. American Society of Clinical Oncology. Annual Meeting · 2024
    Review
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  7. Review
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  11. Article
  12. Immortalization of human normal and NF1 neurofibroma Schwann cells.Laboratory investigation; a journal of technical methods and pathology · 2016
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Denise Emmerich1] FG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany [2] Institute for Medical Genetics and Human Genetics, Universitätsmedizin Berlin, Charité Berlin - Campus Virchow, Berlin, Germany.
Tomasz Zemojtel1] Institute for Medical Genetics and Human Genetics, Universitätsmedizin Berlin, Charité Berlin - Campus Virchow, Berlin, Germany [2] Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany [3] Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.
Jochen Hecht1] FG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany [2] Berlin-Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany.
Peter KrawitzFG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Malte SpielmannFG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Jirko Kühnisch1] FG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany [2] Institute for Medical Genetics and Human Genetics, Universitätsmedizin Berlin, Charité Berlin - Campus Virchow, Berlin, Germany.
Karolina KobusFG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Monika OsswaldFG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Verena HeinrichInstitute for Medical Genetics and Human Genetics, Universitätsmedizin Berlin, Charité Berlin - Campus Virchow, Berlin, Germany.
Peter BerlienCenter for Laser Medicine, Evangelic Elisabeth Clinic, Berlin, Germany.
Ute MüllerCenter for Laser Medicine, Evangelic Elisabeth Clinic, Berlin, Germany.
Victor-F MautnerDepartment of Maxillofacial Surgery, University Hospital Eppendorf, Hamburg, Germany.
Katharina WimmerDivision of Human Genetics, Medical University Innsbruck, Innsbruck, Austria.
Peter N RobinsonInstitute for Medical Genetics and Human Genetics, Universitätsmedizin Berlin, Charité Berlin - Campus Virchow, Berlin, Germany.
Martin VingronComputational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Sigrid Tinschert1] Division of Human Genetics, Medical University Innsbruck, Innsbruck, Austria [2] Institute of Clinical Genetics, Carl Gustav Carus Medical Academy, Technical University, Dresden, Germany.
Stefan Mundlos1] FG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany [2] Institute for Medical Genetics and Human Genetics, Universitätsmedizin Berlin, Charité Berlin - Campus Virchow, Berlin, Germany [3] Berlin-Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany.
Mateusz Kolanczyk1] FG Development & Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany [2] Institute for Medical Genetics and Human Genetics, Universitätsmedizin Berlin, Charité Berlin - Campus Virchow, Berlin, Germany.
Max Planck Institute for Molecular Genetics · DECharité - Universitätsmedizin Berlin · DEEvangelisches Krankenhaus Königin Elisabeth Herzberge · DEInnsbruck Medical University · ATUniversität Hamburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neurofibromatosis type 1 (NF1) (MIM#162200) is a relatively frequent genetic condition that predisposes to tumor formation. The main types of tumors occurring in NF1 patients are cutaneous and subcutaneous neurofibromas, plexiform neurofibromas, optic pathway gliomas, and malignant peripheral nerve sheath tumors. To search for somatic mutations in cutaneous (dermal) neurofibromas, whole-exome sequencing (WES) was performed on seven spatially separated tumors and two reference tissues (blood and unaffected skin) from a single NF1 patient. Validation of WES findings was done using routine Sanger sequencing or Sequenom IPlex SNP genotyping. Exome sequencing confirmed the existence of a known familial splice-site mutation NM_000267.3:c.3113+1G>A in exon 23 of NF1 gene (HGMD ID CS951480) in blood, unaffected skin, and all tumor samples. In five out of seven analyzed tumors, we additionally detected second-hit mutations in the NF1 gene. Four of them were novel and one was previously observed. Each mutation was distinct, demonstrating the independent origin of each tumor. Only in two of seven tumors we detected an additional somatic mutation that was not associated with NF1. Our study demonstrated that somatic mutations of NF1 are likely the main drivers of cutaneous tumor formation. The study provides evidence for the rareness of single base pair level alterations in the exomes of benign NF1 cutaneous tumors.

Indexed as

MutationClonal EvolutionExomeFemaleHumansMiddle AgedNeurofibromatosis 1Neurofibromin 1Polymorphism, Single NucleotideSkin NeoplasmsNeurofibromin 1

Identifiers

PMID25293717
PMCPMC4795057
OpenAlexW2131056132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.