Evidence map›Paper›PMID 25291993›Full record

ArticleAngewandte Chemie (International ed. in English)2014

Discovery of selective small-molecule activators of a bacterial glycoside hydrolase.

John F Darby, Jens Landström, Christian Roth, Yuan He, Gideon J Davies, Roderick E Hubbard

Open access · bronzeAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Serendipitous Identification of a Covalent Activator of Liver Pyruvate Kinase.Chembiochem : a European journal of chemical biology · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Biomolecular NMR assignments · 2020
    Article
  8. Review
  9. Article
  10. Article
  11. Galactose as novel target against Acanthamoeba cysts.PLoS neglected tropical diseases · 2019
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

John F DarbyYork Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD (UK).
Jens Landström
Christian Roth
Yuan He
Gideon J Davies
Roderick E Hubbard
University of York · GB

Funding

Biotechnology and Biological Sciences Research Council BB/K003836/1
6 · The paper itself

Abstract

Fragment-based approaches are used routinely to discover enzyme inhibitors as cellular tools and potential therapeutic agents. There have been few reports, however, of the discovery of small-molecule enzyme activators. Herein, we describe the discovery and characterization of small-molecule activators of a glycoside hydrolase (a bacterial O-GlcNAc hydrolase). A ligand-observed NMR screen of a library of commercially available fragments identified an enzyme activator which yielded an approximate 90 % increase in kcat /KM  values (kcat =catalytic rate constant; KM =Michaelis constant). This compound binds to the enzyme in close proximity to the catalytic center. Evolution of the initial hits led to improved compounds that behave as nonessential activators effecting both KM  and Vmax  values (Vmax =maximum rate of reaction). The compounds appear to stabilize an active "closed" form of the enzyme. Such activators could offer an orthogonal alternative to enzyme inhibitors for perturbation of enzyme activity in vivo, and could also be used for glycoside hydrolase activation in many industrial processes.

Indexed as

BacteroidesCrystallography, X-RayEnzyme ActivationGlycoside HydrolasesModels, MolecularSmall Molecule LibrariesGlycoside HydrolasesSmall Molecule Librariesenzyme catalysisglycoside hydrolaseglycosylationinhibitorsprotein structures

Identifiers

PMID25291993
PMCPMC4501319
OpenAlexW2100861143

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.