Evidence map›Paper›PMID 25291602›Full record

ArticleBiochimica et biophysica acta2015

Membrane translocation assay based on proteolytic cleavage: application to diphtheria toxin T domain.

Mykola V Rodnin, Alexey S Ladokhin

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Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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0cells of the map it votes in
5citing papers in PubMed
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1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Mykola V RodninDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, United States.
Alexey S LadokhinDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, United States. Electronic address: aladokhin@kumc.edu.

Funding

pH-Triggered Membrane Insertion of ProteinsR01GM069783 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI COCCO, MELANIE J, KURNIKOVA, MARIA G · 2004 to 2014
$2.5M
NIGMS NIH HHS R01 GM069783NIGMS NIH HHS R01-GM069783
6 · The paper itself

Abstract

The function of diphtheria toxin translocation (T) domain is to transfer the catalytic domain across the endosomal membrane upon acidification. The goal of this study was to develop and apply an in vitro functional assay for T domain activity, suitable for investigation of structure-function relationships of translocation across lipid bilayers of various compositions. Traditionally, T domain activity in vitro is estimated by measuring either conductance in planar lipid bilayers or the release of fluorescent markers from lipid vesicles. While an in vivo cell death assay is the most relevant to physiological function, it cannot be applied to studying the effects of pH or membrane lipid composition on translocation. Here we suggest an assay based on cleavage of the N-terminal part of T domain upon translocation into protease-loaded vesicles. A series of control experiment was used to confirm that cleavage occurs inside the vesicle and not as the result of vesicle disruption. Translocation of the N-terminus of the T domain is shown to require the presence of a critical fraction of anionic lipids, which is consistent with our previous biophysical measurements of insertion. Application of the proposed assay to a series of T domain mutants correlated well with the results of cytotoxicity assay.

Indexed as

Amino Acid SequenceBinding SitesCell Membrane PermeabilityDiphtheria ToxinElectrophoresis, Polyacrylamide GelHydrogen-Ion ConcentrationIntracellular MembranesLipid BilayersMembrane LipidsModels, BiologicalMolecular Sequence DataMutationProtein Structure, TertiaryProtein TransportProteolysisThrombinDiphtheria ToxinLipid BilayersMembrane LipidsThrombinUnilamellar LiposomesDiphtheria toxinLarge unilamellar vesiclesMembrane translocationpH-triggered membrane insertionThrombin proteolysis

Identifiers

PMID25291602
PMCPMC4259893

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.