Evidence map›Paper›PMID 25289590›Full record

ArticleNature structural & molecular biology2014

A 3D cellular context for the macromolecular world.

Ardan Patwardhan, Alun Ashton, Robert Brandt, Sarah Butcher, Raffaella Carzaniga, Wah Chiu, Lucy Collinson, Pascal Doux, Elizabeth Duke, Mark H Ellisman and 14 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. EMDB-the Electron Microscopy Data Bank.Nucleic acids research · 2024
    Review
  4. Article
  5. Article
  6. Review
  7. Evolving data standards for cryo-EM structures.Structural dynamics (Melville, N.Y.) · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. PSF correction in soft X-ray tomography.Journal of structural biology · 2018
    Article
  13. Review
  14. Article
  15. Trends in the Electron Microscopy Data Bank (EMDB).Acta crystallographica. Section D, Structural biology · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Ardan PatwardhanProtein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Alun AshtonDiamond Light Source, Didcot, UK.
Robert BrandtFEI Visualization Sciences Group, Mérignac, France.
Sarah ButcherInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Raffaella CarzanigaElectron Microscopy Unit, Cancer Research UK London Research Institute, London, UK.
Wah ChiuNational Center for Macromolecular Imaging, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas.
Lucy CollinsonElectron Microscopy Unit, Cancer Research UK London Research Institute, London, UK.
Pascal DouxFEI Visualization Sciences Group, Mérignac, France.
Elizabeth DukeDiamond Light Source, Didcot, UK.
Mark H EllismanCenter for Research in Biological Systems, National Center for Microscopy and Imaging Research (NCMIR), University of California, San Diego, San Diego, California, USA.
Erik FrankenFEI Electron Optics B.V., Eindhoven, the Netherlands.
Kay GrünewaldDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, Oxford, UK.
Jean-Karim HericheCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Abraham KosterDepartment of Molecular Cell Biology, Leiden University Medical Center, Leiden, the Netherlands.
Werner KühlbrandtDepartment of Structural Biology, Max Planck Institute for Biophysics, Frankfurt, Germany.
Ingvar LagerstedtProtein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Carolyn LarabellDepartment of Anatomy, University of California, San Francisco, San Francisco, California, USA.
Catherine L LawsonResearch Collaboratory for Structural Bioinformatics, Rutgers University, Piscataway, New Jersey, USA.
Helen R SaibilInstitute of Structural and Molecular Biology, Department of Crystallography, Birkbeck College, London, UK.
Eduardo Sanz-GarcíaProtein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.
Sriram SubramaniamCenter for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
Paul VerkadeWolfson Bioimaging Facility, School of Biochemistry, University of Bristol, Bristol, UK.
Jason R SwedlowCentre for Gene Regulation and Expression, University of Dundee, Dundee, UK.
Gerard J KleywegtProtein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK.

Funding

IVEM and Image Analysis ResourceP41GM103412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2012 to 2019
$17.9M
Unified Data Resource for Large Complexes Determined by Cryo-Electron MicroscopyR01GM079429 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2007 to 2021
$11.6M
Technology Development for 3D Electron MicroscopyZIABC010826 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SUBRAMANIAM, SRIRAM · 2009 to 2019
$9.1M
TrainingP41GM103445 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LARABELL, CAROLYN A · 2012 to 2019
$8.2M
Molecular structures of membrane protein assembliesZIABC010824 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SUBRAMANIAM, SRIRAM · 2009 to 2019
$8.0M
Biotechnology and Biological Sciences Research Council BB/G022577/1Biotechnology and Biological Sciences Research Council BB/G022585Biotechnology and Biological Sciences Research Council BB/G022585/1Medical Research Council MR/L007835Medical Research Council MR/L007835/1NIGMS NIH HHS P41 GM103412NIGMS NIH HHS P41 GM103445NIGMS NIH HHS R01 GM079429Wellcome Trust 088944Wellcome Trust 090895Wellcome Trust 095931Wellcome Trust 097945
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Electron Microscope TomographyImaging, Three-DimensionalTomography, X-RayCellsData CurationHumansMacromolecular SubstancesMicroscopy, Electron, ScanningMolecular ConformationMacromolecular Substances

Identifiers

PMID25289590
PMCPMC4346196

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.