Evidence map›Paper›PMID 25289017›Full record

ArticleThe plant pathology journal2014

Expression of colSR Genes Increased in the rpf Mutants of Xanthomonas oryzae pv. oryzae KACC10859.

Young-Hee Noh, Sun-Young Kim, Jong-Woo Han, Young-Su Seo, Jae-Soon Cha

Open access · goldAbstract read
In one paragraph

Article in The plant pathology journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Young-Hee NohDepartment of Plant Medicine, Chungbuk National University, Cheongju, Chungbuk 361-763, Korea.
Sun-Young KimDepartment of Microbiology, Pusan National University, Busan 609-735, Korea.
Jong-Woo HanWatermelon Research Institute, Chungbuk ARES, Cheongwon, Chungbuk 363-883, Korea.
Young-Su SeoDepartment of Microbiology, Pusan National University, Busan 609-735, Korea.
Jae-Soon ChaDepartment of Plant Medicine, Chungbuk National University, Cheongju, Chungbuk 361-763, Korea.
Chungbuk National University · KRPusan National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rpf genes and colS XOO1207/colR XOO1208 were known to require for virulence of Xanthomonas oryzae pv. oryzae (Xoo). In Xoo KACC10331 genome, two more colS/colR genes, colS XOO3534 (raxH)/colR XOO3535 (raxR) and colS XOO3762/colR XOO3763 were annotated. The colS XOO3534/colR XOO3535 were known to control AvrXa21 activity and functions of colS XOO3762/colR XOO3763 were unknown in Xoo. To characterize the relationship between rpf and colS/colR genes, expression of colS/colR genes in Rpf mutants of Xoo were analyzed with quantitative reverse transcription PCR (qRT-PCR). Expressions of all three colS/colR genes increased in the rpfF mutant in which DSF synthesis is defective. Expression of colS XOO1207/colR XOO1208, colS XOO3534/colR XOO3535 and colS XOO3762/colR XOO3763 increased 2, 2-7, 3-13 folds respectively. Expression of colS XOO3534 and colS XOO3762 also increased 2-4 folds in the rpfG mutant in which the signal from DSF is no longer transferred to down-stream. Expression of the other colS/colR genes was not significantly changed in the rpfG mutant compared to the wild type. Since RpfF and RpfG are responsible for DSF synthesis and signal transfer from DSF to down-stream to regulate virulence gene expression, these results suggest that the DSF and DSF-mediated signal regulate negatively three colS/colR genes in Xoo.

Indexed as

ColS/ColRRpfvirulence regulationXanthomonas oryzae pv. oryzae

Identifiers

PMID25289017
PMCPMC4181107
OpenAlexW2093682249

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.