Evidence map›Paper›PMID 25288959›Full record

ArticleThe plant pathology journal2013

The RpoS Sigma Factor Negatively Regulates Production of IAA and Siderophore in a Biocontrol Rhizobacterium, Pseudomonas chlororaphis O6.

Sang A Oh, Ji Soo Kim, Ju Yeon Park, Song Hee Han, Christian Dimkpa, Anne J Anderson, Young Cheol Kim

Open access · goldAbstract read
In one paragraph

Article in The plant pathology journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Isolation and Characterization ofPlants (Basel, Switzerland) · 2021
    Article
  3. Whole Genome Sequencing and TnInternational journal of molecular sciences · 2020
    Article
  4. The plant pathology journal · 2019
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Sang A OhInstitute of Environmentally-Friendly Agriculture, Chonnam National University, Gwangju 500-757, Korea.
Ji Soo KimInstitute of Environmentally-Friendly Agriculture, Chonnam National University, Gwangju 500-757, Korea.
Ju Yeon ParkInstitute of Environmentally-Friendly Agriculture, Chonnam National University, Gwangju 500-757, Korea.
Song Hee HanInstitute of Environmentally-Friendly Agriculture, Chonnam National University, Gwangju 500-757, Korea.
Christian DimkpaDepartment of Biology, Utah State University, Logan, UT, USA.
Anne J AndersonDepartment of Biology, Utah State University, Logan, UT, USA.
Young Cheol KimInstitute of Environmentally-Friendly Agriculture, Chonnam National University, Gwangju 500-757, Korea.
Chonnam National University · KRUtah State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The stationary-phase sigma factor, RpoS, influences the expression of factors important in survival of Pseudomonas chlororaphis O6 in the rhizosphere. A partial proteomic profile of a rpoS mutant in P. chlororaphis O6 was conducted to identify proteins under RpoS regulation. Five of 14 differentially regulated proteins had unknown roles. Changes in levels of proteins in P. chlororaphis O6 rpoS mutant were associated with iron metabolism, and protection against oxidative stress. The P. chlororaphis O6 rpoS mutant showed increased production of a pyoverdine-like siderophore, indole acetic acid, and altered isozyme patterns for peroxidase, catalase and superoxide dismutase. Consequently, sensitivity to hydrogen peroxide exposure increased in the P. chlororaphis O6 rpoS mutant, compared with the wild type. Taken together, RpoS exerted regulatory control over factors important for the habitat of P. chlororaphis O6 in soil and on root surfaces. The properties of several of the proteins in the RpoS regulon are currently unknown.

Indexed as

indole acetic acidironoxidative stressproteomic analysissigma factor RpoS

Identifiers

PMID25288959
PMCPMC4174801
OpenAlexW1991886196

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.