Evidence map›Paper›PMID 25288771›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

The signaling phospholipid PIP3 creates a new interaction surface on the nuclear receptor SF-1.

Raymond D Blind, Elena P Sablin, Kristopher M Kuchenbecker, Hsiu-Ju Chiu, Ashley M Deacon, Debanu Das, Robert J Fletterick, Holly A Ingraham

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 98 citations in OpenAlex.

  1. Review
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  7. ReducediScience · 2026
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  17. Article
  18. Arg1 frommBio · 2024
    Article
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  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Raymond D BlindDepartments of Cellular and Molecular Pharmacology and.
Elena P SablinBiochemistry and Biophysics, University of California, San Francisco, CA 94158; and.
Kristopher M KuchenbeckerBiochemistry and Biophysics, University of California, San Francisco, CA 94158; and.
Hsiu-Ju ChiuJoint Center for Structural Genomics and Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025.
Ashley M DeaconJoint Center for Structural Genomics and Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025.
Debanu DasJoint Center for Structural Genomics and Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025.
Robert J FletterickBiochemistry and Biophysics, University of California, San Francisco, CA 94158; and robert.fletterick@ucsf.edu holly.ingraham@ucsf.edu.
Holly A IngrahamDepartments of Cellular and Molecular Pharmacology and robert.fletterick@ucsf.edu holly.ingraham@ucsf.edu.
University of California, San Francisco · USStanford Synchrotron Radiation Lightsource · USJoint Center for Structural Genomics · US

Funding

Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2010 to 2014
$40.1M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
UCSF IRACDA Scholars ProgramK12GM081266 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Raymond M. Esquerra, HOLLY A. INGRAHAM · 2007 to 2026
$19.4M
Structures of Protein Complexes Regulating Transcription in Enbryonic Stem CellsU01GM094614 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WEBB, PAUL · 2010 to 2014
$5.7M
Mapping Hypothalamic Neurocircuits Controlling Physical ActivityR01DK099722 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI INGRAHAM, HOLLY A. · 2014 to 2018
$2.0M
Structural Analyses of NR5 Orphan Nuclear ReceptorsR01DK072246 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI INGRAHAM, HOLLY A. · 2005 to 2009
$1.7M
Mechanisms of regulation of LRH-1, Nanog and SF-1 by DAX-1R01DK078075 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FLETTERICK, ROBERT J · 2008 to 2011
$1.5M
Cancer cell signaling through lipids complexed to proteinsK01CA172957 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLIND, RAYMOND DANIEL · 2012 to 2015
$449k
NCI NIH HHS 1K01CA172957NCI NIH HHS K01 CA172957NIDDK NIH HHS P30 DK063720NIDDK NIH HHS R01 DK072246NIDDK NIH HHS R01DK072246NIDDK NIH HHS R01 DK078075NIDDK NIH HHS R01DK078075NIDDK NIH HHS R01 DK099722NIDDK NIH HHS R01DK099722NIGMS NIH HHS K12 GM081266NIGMS NIH HHS K12GM081266NIGMS NIH HHS P41 GM103393NIGMS NIH HHS U01 GM094614NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

The signaling phosphatidylinositol lipids PI(4,5)P2 (PIP2) and PI(3,4,5)P3 (PIP3) bind nuclear receptor 5A family (NR5As), but their regulatory mechanisms remain unknown. Here, the crystal structures of human NR5A1 (steroidogenic factor-1, SF-1) ligand binding domain (LBD) bound to PIP2 and PIP3 show the lipid hydrophobic tails sequestered in the hormone pocket, as predicted. However, unlike classic nuclear receptor hormones, the phosphoinositide head groups are fully solvent-exposed and complete the LBD fold by organizing the receptor architecture at the hormone pocket entrance. The highest affinity phosphoinositide ligand PIP3 stabilizes the coactivator binding groove and increases coactivator peptide recruitment. This receptor-ligand topology defines a previously unidentified regulatory protein-lipid surface on SF-1 with the phosphoinositide head group at its nexus and poised to interact with other proteins. This surface on SF-1 coincides with the predicted binding site of the corepressor DAX-1 (dosage-sensitive sex reversal, adrenal hypoplasia critical region on chromosome X), and importantly harbors missense mutations associated with human endocrine disorders. Our data provide the structural basis for this poorly understood cluster of human SF-1 mutations and demonstrates how signaling phosphoinositides function as regulatory ligands for NR5As.

Indexed as

Amino AcidsAnimalsBiological TransportCell NucleusChromatographyComputer SimulationCrystallography, X-RayElectronsHumansLigandsLipidsMiceModels, MolecularMolecular ConformationMutationMutation, MissenseAmino AcidsLigandsLipidsNR5A1 protein, humanPeptidesPhosphatidylinositolsSolventsSteroidogenic Factor 1steroidogenic factor 1, mouseWatercrystallographyligand dependentlipid transportnucleustranscription

Identifiers

PMID25288771
PMCPMC4210282
OpenAlexW2024955650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.