Evidence map›Paper›PMID 25288752›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Following movement of domain IV of elongation factor G during ribosomal translocation.

Enea Salsi, Elie Farah, Jillian Dann, Dmitri N Ermolenko

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. The role of GTP hydrolysis by EF-G in ribosomal translocation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Ribosome as a Translocase and Helicase.Biochemistry. Biokhimiia · 2021
    Review
  10. Article
  11. Article
  12. Observation of preQRNA biology · 2019
    Article
  13. Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Structural insights into ribosome translocation.Wiley interdisciplinary reviews. RNA · 2016
    Review
  19. Elongation factor G initiates translocation through a power stroke.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  20. EF-G Activation by Phosphate Analogs.Journal of molecular biology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Enea SalsiDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642.
Elie FarahDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642.
Jillian DannDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642.
Dmitri N ErmolenkoDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642 Dmitri_Ermolenko@urmc.rochester.edu.
University of Rochester · US

Funding

Structural Dynamics of TranslationR01GM099719 · NIGMS · UNIVERSITY OF ROCHESTER · PI ERMOLENKO, DMITRI · 2012 to 2020
$2.8M
Faculty Recruitment for the University of Rochester Center for RNA Biology CoreP30GM092424 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2009 to 2010
$767k
NIGMS NIH HHS GM-099719NIGMS NIH HHS P30 GM-092424NIGMS NIH HHS P30 GM092424NIGMS NIH HHS R01 GM099719
6 · The paper itself

Abstract

Translocation of mRNA and tRNAs through the ribosome is catalyzed by a universally conserved elongation factor (EF-G in prokaryotes and EF-2 in eukaryotes). Previous studies have suggested that ribosome-bound EF-G undergoes significant structural rearrangements. Here, we follow the movement of domain IV of EF-G, which is critical for the catalysis of translocation, relative to protein S12 of the small ribosomal subunit using single-molecule FRET. We show that ribosome-bound EF-G adopts distinct conformations corresponding to the pre- and posttranslocation states of the ribosome. Our results suggest that, upon ribosomal translocation, domain IV of EF-G moves toward the A site of the small ribosomal subunit and facilitates the movement of peptidyl-tRNA from the A to the P site. We found no evidence of direct coupling between the observed movement of domain IV of EF-G and GTP hydrolysis. In addition, our results suggest that the pretranslocation conformation of the EF-G-ribosome complex is significantly less stable than the posttranslocation conformation. Hence, the structural rearrangement of EF-G makes a considerable energetic contribution to promoting tRNA translocation.

Indexed as

Biological TransportCatalysisFluorescence Resonance Energy TransferGuanosine TriphosphateMicroscopyPeptide Elongation Factor GProtein BindingProtein Structure, TertiaryProtein Synthesis InhibitorsProtein TransportRibosomesRNA, MessengerRNA, TransferViomycinGuanosine TriphosphatePeptide Elongation Factor GProtein Synthesis InhibitorsRNA, MessengerRNA, TransferViomycinribosomesingle-molecule FRETtRNA translocationviomycin

Identifiers

PMID25288752
PMCPMC4210333
OpenAlexW2058599254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.