Evidence map›Paper›PMID 25288749›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Visualization and quantification of nascent RAD51 filament formation at single-monomer resolution.

Andrea Candelli, Jan Thomas Holthausen, Martin Depken, Ineke Brouwer, Mariëlla A M Franker, Margherita Marchetti, Iddo Heller, Stéphanie Bernard, Edwige B Garcin, Mauro Modesti and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 98 citations in OpenAlex.

  1. Review
  2. Review
  3. HOP2-MND1 chaperones a diffusing DMC1-ssDNA complex to survey dsDNA for homology recognition during meiotic recombination.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  8. Structure of RADX and mechanism for regulation of RAD51 nucleofilaments.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  15. Structure of RADX and mechanism for regulation of RAD51 nucleofilaments.bioRxiv : the preprint server for biology · 2023
    Article
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  20. BRCA2 chaperones RAD51 to single molecules of RPA-coated ssDNA.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Andrea CandelliLaserLaB Amsterdam and Department of Physics and Astronomy, VU University, NL-1081HV, Amsterdam, The Netherlands;
Jan Thomas HolthausenDepartment of Genetics, Cancer Genomics Center, Erasmus University Medical Center, NL-3015CN, Rotterdam, The Netherlands;
Martin DepkenDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, NL-2600GA, Delft, The Netherlands;
Ineke BrouwerLaserLaB Amsterdam and Department of Physics and Astronomy, VU University, NL-1081HV, Amsterdam, The Netherlands;
Mariëlla A M FrankerLaserLaB Amsterdam and Department of Physics and Astronomy, VU University, NL-1081HV, Amsterdam, The Netherlands;
Margherita MarchettiLaserLaB Amsterdam and Department of Physics and Astronomy, VU University, NL-1081HV, Amsterdam, The Netherlands;
Iddo HellerLaserLaB Amsterdam and Department of Physics and Astronomy, VU University, NL-1081HV, Amsterdam, The Netherlands;
Stéphanie BernardCentre de Recherche en Cancérologie de Marseille, CNRS UMR 7258, F-13009 Marseille, France; Institut National de la Santé et de la Recherche Médicale U1068, F-13009 Marseille, France; Institut Paoli-Calmettes, F-13009 Marseille, France; Aix-Marseille Université, F-13284 Marseille, France; and.
Edwige B GarcinCentre de Recherche en Cancérologie de Marseille, CNRS UMR 7258, F-13009 Marseille, France; Institut National de la Santé et de la Recherche Médicale U1068, F-13009 Marseille, France; Institut Paoli-Calmettes, F-13009 Marseille, France; Aix-Marseille Université, F-13284 Marseille, France; and.
Mauro ModestiCentre de Recherche en Cancérologie de Marseille, CNRS UMR 7258, F-13009 Marseille, France; Institut National de la Santé et de la Recherche Médicale U1068, F-13009 Marseille, France; Institut Paoli-Calmettes, F-13009 Marseille, France; Aix-Marseille Université, F-13284 Marseille, France; and.
Claire WymanDepartment of Genetics, Cancer Genomics Center, Erasmus University Medical Center, NL-3015CN, Rotterdam, The Netherlands; Department of Radiation Oncology, Erasmus University Medical Center, NL-3015CE, Rotterdam, The Netherlands.
Gijs J L WuiteLaserLaB Amsterdam and Department of Physics and Astronomy, VU University, NL-1081HV, Amsterdam, The Netherlands;
Erwin J G PetermanLaserLaB Amsterdam and Department of Physics and Astronomy, VU University, NL-1081HV, Amsterdam, The Netherlands; e.j.g.peterman@vu.nl.
Vrije Universiteit Amsterdam · NLErasmus MC · NLInserm · FRDelft University of Technology · NLInstitut Paoli-Calmettes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During recombinational repair of double-stranded DNA breaks, RAD51 recombinase assembles as a nucleoprotein filament around single-stranded DNA to form a catalytically proficient structure able to promote homology recognition and strand exchange. Mediators and accessory factors guide the action and control the dynamics of RAD51 filaments. Elucidation of these control mechanisms necessitates development of approaches to quantitatively probe transient aspects of RAD51 filament dynamics. Here, we combine fluorescence microscopy, optical tweezers, and microfluidics to visualize the assembly of RAD51 filaments on bare single-stranded DNA and quantify the process with single-monomer sensitivity. We show that filaments are seeded from RAD51 nuclei that are heterogeneous in size. This heterogeneity appears to arise from the energetic balance between RAD51 self-assembly in solution and the size-dependent interaction time of the nuclei with DNA. We show that nucleation intrinsically is substrate selective, strongly favoring filament formation on bare single-stranded DNA. Furthermore, we devised a single-molecule fluorescence recovery after photobleaching assay to independently observe filament nucleation and growth, permitting direct measurement of their contributions to filament formation. Our findings yield a comprehensive, quantitative understanding of RAD51 filament formation on bare single-stranded DNA that will serve as a basis to elucidate how mediators help RAD51 filament assembly and accessory factors control filament dynamics.

Indexed as

Cell NucleusDNA, Single-StrandedFluorescent DyesHumansLikelihood FunctionsMicrofluidicsMicroscopy, FluorescenceOptical TweezersRad51 RecombinaseRecombination, GeneticReproducibility of ResultsRNA, Small InterferingStochastic ProcessesSubstrate SpecificityDNA, Single-StrandedFluorescent DyesRAD51 protein, humanRad51 RecombinaseRNA, Small InterferingBRCA2homologous recombinationoptical tweezersRAD51single-molecule fluorescence

Identifiers

PMID25288749
PMCPMC4210327
OpenAlexW1980455934

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.