Evidence map›Paper›PMID 25288083›Full record

ArticleAntimicrobial agents and chemotherapy2014

Crystal structures of Klebsiella pneumoniae dihydrofolate reductase bound to propargyl-linked antifolates reveal features for potency and selectivity.

Kristen M Lamb, Michael N Lombardo, Jeremy Alverson, Nigel D Priestley, Dennis L Wright, Amy C Anderson

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kristen M LambDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut, USA.
Michael N LombardoDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut, USA.
Jeremy AlversonDepartment of Chemistry, University of Montana, Missoula, Montana, USA.
Nigel D PriestleyDepartment of Chemistry, University of Montana, Missoula, Montana, USA.
Dennis L WrightDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut, USA.
Amy C AndersonDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut, USA amy.anderson@uconn.edu.
University of Connecticut · USUniversity of Montana · US

Funding

Propargyl-linked Antifolates Targeting Klebsiella pneumoniaeR01AI104841 · NIAID · UNIVERSITY OF CONNECTICUT STORRS · PI WRIGHT, DENNIS L. · 2014 to 2018
$3.1M
NIAID NIH HHS AI104841NIAID NIH HHS R01 AI104841
6 · The paper itself

Abstract

Resistance to the antibacterial antifolate trimethoprim (TMP) is increasing in members of the family Enterobacteriaceae, driving the design of next-generation antifolates effective against these Gram-negative pathogens. The propargyl-linked antifolates are potent inhibitors of dihydrofolate reductases (DHFR) from several TMP-sensitive and -resistant species, including Klebsiella pneumoniae. Recently, we have determined that these antifolates inhibit the growth of strains of K. pneumoniae, some with MIC values of 1 μg/ml. In order to further the design of potent and selective antifolates against members of the Enterobacteriaceae, we determined the first crystal structures of K. pneumoniae DHFR bound to two of the propargyl-linked antifolates. These structures highlight that interactions with Leu 28, Ile 50, Ile 94, and Leu 54 are necessary for potency; comparison with structures of human DHFR bound to the same inhibitors reveal differences in residues (N64E, P61G, F31L, and V115I) and loop conformations (residues 49 to 53) that may be exploited for selectivity.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsCrystallography, X-RayEscherichia coliFolic Acid AntagonistsGene ExpressionKlebsiella pneumoniaeMolecular Docking SimulationProtein Interaction Domains and MotifsProtein Structure, SecondaryRecombinant ProteinsStructure-Activity RelationshipTetrahydrofolate DehydrogenaseTrimethoprimTrimethoprim ResistanceAnti-Bacterial AgentsBacterial ProteinsFolic Acid AntagonistsRecombinant ProteinsTetrahydrofolate DehydrogenaseTrimethoprim

Identifiers

PMID25288083
PMCPMC4249513
OpenAlexW2102176028

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.