Evidence map›Paper›PMID 25287913›Full record

ArticleProteins2015

Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering.

Devin W Close, Craig Don Paul, Patricia S Langan, Matthew C J Wilce, Daouda A K Traore, Randal Halfmann, Reginaldo C Rocha, Geoffery S Waldo, Riley J Payne, Joseph B Rucker and 2 more

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Directed evolution of the fluorescent protein CGP withApplied and environmental microbiology · 2024
    Article
  6. Engineering highly stable variants of Corynactis californica green fluorescent proteins.Protein science : a publication of the Protein Society · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Devin W CloseBioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico.
Craig Don PaulDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria, Australia.
Patricia S LanganBioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico.
Matthew C J WilceDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria, Australia.
Daouda A K TraoreDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria, Australia.
Randal HalfmannDepartment of Biochemistry, UT Southwestern Medical Center, Dallas, Texas.
Reginaldo C RochaCenter for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico.
Geoffery S WaldoBioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico.
Riley J PayneIntegral Molecular, Philadelphia, Pennsylvania.
Joseph B RuckerIntegral Molecular, Philadelphia, Pennsylvania.
Mark PrescottDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria, Australia.
Andrew R M BradburyBioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico.
Los Alamos National Laboratory · USMonash University · AUIntegral Molecular (United States) · USSouthwestern Medical Center · US

Funding

PROJECT 5 - DUKE - STRUCTURE VALIDATION AND IMPROVEMENT FOR PROTEINS AND N. ACIDSP01GM063210 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI ADAMS, PAUL DAVID · 2001 to 2021
$33.5M
Proj 3: Enhancing crystallization by supplying natural binding partnersP01GM098177 · NIGMS · LOS ALAMOS NAT SECTY-LOS ALAMOS NAT LAB · PI BRADBURY, ANDREW, EISENBERG, DAVID · 2012 to 2015
$4.7M
Contributions of protein aggregation to gene regulation and phenotypic diversityDP5OD009152 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI HALFMANN, RANDAL ARTHUR · 2011 to 2015
$1.6M
NIGMS NIH HHS GM063210NIGMS NIH HHS P01 GM063210NIGMS NIH HHS P01 GM098177NIH HHS DP5 OD009152NIH HHS DP5-OD009152
6 · The paper itself

Abstract

In this article, we describe the engineering and X-ray crystal structure of Thermal Green Protein (TGP), an extremely stable, highly soluble, non-aggregating green fluorescent protein. TGP is a soluble variant of the fluorescent protein eCGP123, which despite being highly stable, has proven to be aggregation-prone. The X-ray crystal structure of eCGP123, also determined within the context of this paper, was used to carry out rational surface engineering to improve its solubility, leading to TGP. The approach involved simultaneously eliminating crystal lattice contacts while increasing the overall negative charge of the protein. Despite intentional disruption of lattice contacts and introduction of high entropy glutamate side chains, TGP crystallized readily in a number of different conditions and the X-ray crystal structure of TGP was determined to 1.9 Å resolution. The structural reasons for the enhanced stability of TGP and eCGP123 are discussed. We demonstrate the utility of using TGP as a fusion partner in various assays and significantly, in amyloid assays in which the standard fluorescent protein, EGFP, is undesirable because of aberrant oligomerization.

Indexed as

Amino Acid SequenceAmyloidBiological AssayCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGreen Fluorescent ProteinsHEK293 CellsHot TemperatureHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsModels, MolecularMolecular Sequence DataProtein EngineeringAmyloidGreen Fluorescent ProteinsRecombinant Fusion ProteinseCGP123GFP structureprotein engineeringstructure-guided mutagenesisthermal green proteinthermal stabilityX-ray crystallography

Identifiers

PMID25287913
PMCPMC4592778
OpenAlexW1958753337

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.